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    SQD1 sulfoquinovosyldiacylglycerol 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829440, updated on 15-Oct-2023

    Summary

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    Gene symbol
    SQD1
    Gene description
    sulfoquinovosyldiacylglycerol 1
    Primary source
    Araport:AT4G33030
    Locus tag
    AT4G33030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I10.6; sulfoquinovosyldiacylglycerol 1; UDP-SULFOQUINOVOSE SYNTHASE
    Summary
    involved in sulfolipid biosynthesis
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    Genomic context

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    See SQD1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (15935373..15937833)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene calcineurin B-like protein 10 Neighboring gene glycine decarboxylase P-protein 1 Neighboring gene ZIP metal ion transporter family Neighboring gene Thioredoxin superfamily protein Neighboring gene calmodulin-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Recombinant Arabidopsis SQD1 converts udp-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose in vitro. Sanda S, et al. J Biol Chem, 2001 Feb 9. PMID 11073956
    2. Phosphate availability affects the thylakoid lipid composition and the expression of SQD1, a gene required for sulfolipid biosynthesis in Arabidopsis thaliana. Essigmann B, et al. Proc Natl Acad Sci U S A, 1998 Feb 17. PMID 9465123, Free PMC Article
    3. A mutant of the Arabidopsis phosphate transporter PHT1;1 displays enhanced arsenic accumulation. Catarecha P, et al. Plant Cell, 2007 Mar. PMID 17400898, Free PMC Article
    4. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
    5. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119457.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDPsulfoquinovose synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables UDPsulfoquinovose synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sulfotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to phosphate starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within glycolipid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within sulfolipid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    sulfoquinovosyldiacylglycerol 1
    NP_195029.1
    • sulfoquinovosyldiacylglycerol 1 (SQD1); FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity, zinc ion binding; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 10748 Blast hits to 10748 proteins in 2398 species: Archae - 273; Bacteria - 7931; Metazoa - 289; Fungi - 89; Plants - 466; Viruses - 5; Other Eukaryotes - 1695 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15935373..15937833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119457.4 → NP_195029.1  sulfoquinovosyldiacylglycerol 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195029.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48917
      UniProtKB/TrEMBL
      A0A178V3D8, A0A5S9XZ02, A0A654FVF1
      Conserved Domains (1) summary
      PLN02572
      Location:62 → 477
      PLN02572; UDP-sulfoquinovose synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O48917.1

    Gene LinkOut

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