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    LOC100174868 alpha 2,8-sialyltransferase ST8Sia VI [ Gasterosteus aculeatus (three-spined stickleback) ]

    Gene ID: 100174868, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC100174868
    Gene description
    alpha 2,8-sialyltransferase ST8Sia VI
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gasterosteus aculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current GAculeatus_UGA_version5 (GCF_016920845.1) 11 NC_053222.1 (7184626..7188922)

    Chromosome 11 - NC_053222.1Genomic Context describing neighboring genes Neighboring gene gap junction protein gamma 1 Neighboring gene alpha-2,8-sialyltransferase 8E-like Neighboring gene alpha-2,8-sialyltransferase 8E-like Neighboring gene alpha-2,8-sialyltransferase 8E-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053222.1 Chromosome 11 Reference GAculeatus_UGA_version5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes. Harduin-Lepers A, et al. BMC Evol Biol, 2008 Sep 23. PMID 18811928, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-glycan processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oligosaccharide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha 2,8-sialyltransferase ST8Sia VI
    Names
    siat 8F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001267633.1 → NP_001254562.1  alpha 2,8-sialyltransferase ST8Sia VI

      See identical proteins and their annotated locations for NP_001254562.1

      Status: PROVISIONAL

      Source sequence(s)
      AM419017
      UniProtKB/TrEMBL
      A1KQY8, G3P3P3
      Conserved Domains (1) summary
      pfam00777
      Location:97 → 350
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GAculeatus_UGA_version5 Primary Assembly

    Genomic

    1. NC_053222.1 Reference GAculeatus_UGA_version5 Primary Assembly

      Range
      7184626..7188922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040189787.1 → XP_040045721.1  alpha 2,8-sialyltransferase ST8Sia VI isoform X1

      UniProtKB/TrEMBL
      G3P3P3

    RNA

    1. XR_005713360.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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