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    XB5960519 uncharacterized XB5960519 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100216114, updated on 21-Jun-2023

    Summary

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    Symbol
    XB5960519provided by Xenbase
    Full Name
    uncharacterized XB5960519provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5960520
    See related
    Ensembl:ENSXETG00000005248
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    See XB5960519 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (86487675..86498002)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (82327775..82338196)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene LCK proto-oncogene, Src family tyrosine kinase Neighboring gene family with sequence similarity 167, member B Neighboring gene eukaryotic translation initiation factor 3 subunit I Neighboring gene transmembrane protein 234 Neighboring gene KH domain containing, RNA binding, signal transduction associated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100216114

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142095.1 → NP_001135567.1  uncharacterized protein LOC100216114

      See identical proteins and their annotated locations for NP_001135567.1

      Status: PREDICTED

      Source sequence(s)
      BC168058
      UniProtKB/TrEMBL
      B4F6Y4, L7MUJ8
      Related
      ENSXETP00000038448.3, ENSXETT00000038448.5
      Conserved Domains (2) summary
      cd13211
      Location:1 → 121
      PH-GRAM_MTMR9; Myotubularian (MTM) related 9 protein (MTMR9) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:133 → 469
      Myotub-related; Myotubularin-like phosphatase domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      86487675..86498002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895748.1 → XP_031751608.1  uncharacterized protein LOC100216114 isoform X1

      UniProtKB/TrEMBL
      A0A6I8RT34
      Related
      ENSXETP00000085888.2, ENSXETT00000088575.2
      Conserved Domains (2) summary
      cd13211
      Location:1 → 121
      PH-GRAM_MTMR9; Myotubularian (MTM) related 9 protein (MTMR9) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:147 → 470
      Myotub-related; Myotubularin-like phosphatase domain

    2. XM_031895749.1 → XP_031751609.1  uncharacterized protein LOC100216114 isoform X2

      UniProtKB/TrEMBL
      A0A8J1J181
      Conserved Domains (2) summary
      cd13211
      Location:1 → 121
      PH-GRAM_MTMR9; Myotubularian (MTM) related 9 protein (MTMR9) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:147 → 470
      Myotub-related; Myotubularin-like phosphatase domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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