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    NR3C1 nuclear receptor subfamily 3 group C member 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100394916, updated on 25-Apr-2024

    Summary

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    Gene symbol
    NR3C1
    Gene description
    nuclear receptor subfamily 3 group C member 1
    See related
    Ensembl:ENSCJAG00000018337
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Also known as
    GR; GRL
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (39777093..40265807, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (40057067..40545833, complement)

    Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA36 family Neighboring gene fibroblast growth factor 1 Neighboring gene Rho GTPase activating protein 26 Neighboring gene 40S ribosomal protein S3a-like Neighboring gene NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa pseudogene Neighboring gene NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Postnatal ontogeny of hippocampal expression of the mineralocorticoid and glucocorticoid receptors in the common marmoset monkey. Pryce CR, et al. Eur J Neurosci, 2005 Mar. PMID 15845080
    2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables steroid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucocorticoid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular glucocorticoid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucocorticoid receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257250.2 → NP_001244179.1  glucocorticoid receptor

      See identical proteins and their annotated locations for NP_001244179.1

      Status: PROVISIONAL

      Source sequence(s)
      AY225975
      UniProtKB/Swiss-Prot
      Q6XLJ0
      UniProtKB/TrEMBL
      A0A2U3TVB2, U3EM87
      Conserved Domains (3) summary
      cd07076
      Location:531 → 777
      NR_LBD_GR; Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily
      cd07172
      Location:417 → 494
      NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
      pfam02155
      Location:26 → 401
      GCR; Glucocorticoid receptor

    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071443.1 Reference mCalJa1.2.pat.X

      Range
      39777093..40265807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035277201.2 → XP_035133092.1  glucocorticoid receptor isoform X1

      UniProtKB/TrEMBL
      A0A2U3TVB2, A0A6D5HP83
      Conserved Domains (3) summary
      cd07076
      Location:532 → 778
      NR_LBD_GR; Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily
      cd07172
      Location:417 → 495
      NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
      pfam02155
      Location:26 → 401
      GCR; Glucocorticoid receptor

    2. XM_054246563.1 → XP_054102538.1  glucocorticoid receptor isoform X1

      UniProtKB/TrEMBL
      A0A6D5HP83

    3. XM_054246578.1 → XP_054102553.1  glucocorticoid receptor isoform X2

      UniProtKB/Swiss-Prot
      Q6XLJ0
      UniProtKB/TrEMBL
      U3EM87

    4. XM_017964560.4 → XP_017820049.1  glucocorticoid receptor isoform X1

      UniProtKB/TrEMBL
      A0A2U3TVB2, A0A6D5HP83
      Conserved Domains (3) summary
      cd07076
      Location:532 → 778
      NR_LBD_GR; Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily
      cd07172
      Location:417 → 495
      NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
      pfam02155
      Location:26 → 401
      GCR; Glucocorticoid receptor

    5. XM_017964552.4 → XP_017820041.1  glucocorticoid receptor isoform X1

      UniProtKB/TrEMBL
      A0A2U3TVB2, A0A6D5HP83
      Conserved Domains (3) summary
      cd07076
      Location:532 → 778
      NR_LBD_GR; Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily
      cd07172
      Location:417 → 495
      NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
      pfam02155
      Location:26 → 401
      GCR; Glucocorticoid receptor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6XLJ0.1 GenPept UniProtKB/Swiss-Prot:Q6XLJ0

    Gene LinkOut

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