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    rag1 recombination activating 1 [ Stegastes partitus (bicolor damselfish) ]

    Gene ID: 103353083, updated on 11-Mar-2024

    Summary

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    Gene symbol
    rag1
    Gene description
    recombination activating 1
    See related
    Ensembl:ENSSPAG00000014727
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Stegastes partitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577791.1 (880017..884158, complement)

    NW_007577791.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 16-like Neighboring gene uncharacterized LOC103353084 Neighboring gene recombination activating gene 2 Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007577791 unplaced scaffold reference Stegastes_partitus-1.0.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Stegastes_partitus-1.0.2

    Genomic

    1. NW_007577791.1 Reference Stegastes_partitus-1.0.2

      Range
      880017..884158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008275863.1 → XP_008274085.1  V(D)J recombination-activating protein 1

      UniProtKB/TrEMBL
      A0A3B5B161
      Related
      ENSSPAP00000019502.1, ENSSPAT00000019797.1
      Conserved Domains (3) summary
      smart00184
      Location:312 → 350
      RING; Ring finger
      pfam12560
      Location:12 → 310
      RAG1_imp_bd; RAG1 importin binding
      pfam12940
      Location:412 → 1060
      RAG1; Recombination-activation protein 1 (RAG1)
    Nucleotide Protein
    Heading Accession and Version

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