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    LOC104812303 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [ Tarenaya hassleriana ]

    Gene ID: 104812303, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC104812303
    Gene description
    trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tarenaya hassleriana
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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    Genomic context

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    See LOC104812303 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010965372.1 (4857845..4860870)

    NW_010965372.1Genomic Context describing neighboring genes Neighboring gene protein SRG1-like Neighboring gene probable sodium/metabolite cotransporter BASS1, chloroplastic Neighboring gene B-box zinc finger protein 22-like Neighboring gene mechanosensitive ion channel protein 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010965372.1 Unplaced Scaffold Reference ASM46358v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-L-rhamnose synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-glucose 4,6-dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables dTDP-glucose 4,6-dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in UDP-rhamnose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in auxin export across the plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in flavonol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM46358v1

    Genomic

    1. NW_010965372.1 Reference ASM46358v1

      Range
      4857845..4860870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010539392.1 → XP_010537694.1  trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1

      Conserved Domains (3) summary
      PLN02778
      Location:377 → 670
      PLN02778; 3,5-epimerase/4-reductase
      cd05246
      Location:7 → 324
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
      PLN02260
      Location:1 → 670
      PLN02260; probable rhamnose biosynthetic enzyme
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases