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    rag1 recombination activating 1 [ Notothenia coriiceps (black rockcod) ]

    Gene ID: 104941239, updated on 12-Mar-2024

    Summary

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    Gene symbol
    rag1
    Gene description
    recombination activating 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Notothenia coriiceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011335988.1 (53788..57919)

    NW_011335988.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) Neighboring gene uncharacterized LOC104941236 Neighboring gene recombination activating gene 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011335988.1 Unplaced Scaffold Reference NC01 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NC01 Primary Assembly

    Genomic

    1. NW_011335988.1 Reference NC01 Primary Assembly

      Range
      53788..57919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010766307.1 → XP_010764609.1  V(D)J recombination-activating protein 1

      UniProtKB/TrEMBL
      A0A6I9MD21
      Conserved Domains (3) summary
      smart00184
      Location:313 → 351
      RING; Ring finger
      pfam12560
      Location:12 → 311
      RAG1_imp_bd; RAG1 importin binding
      pfam12940
      Location:411 → 1057
      RAG1; Recombination-activation protein 1 (RAG1)
    Nucleotide Protein
    Heading Accession and Version

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