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    PDXDC1 pyridoxal dependent decarboxylase domain containing 1 [ Bos taurus (cattle) ]

    Gene ID: 505868, updated on 13-Apr-2024

    Summary

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    Gene symbol
    PDXDC1
    Gene description
    pyridoxal dependent decarboxylase domain containing 1
    See related
    Ensembl:ENSBTAG00000004801
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 25
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (13731837..13786695, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene microRNA mir-562 Neighboring gene N-terminal asparagine amidase Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene uncharacterized LOC132343846

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC179380

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbon-carbon lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyridoxal-dependent decarboxylase domain-containing protein 1
    NP_001095329.1
    XP_010817588.1
    XP_059737172.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101859.2 → NP_001095329.1  pyridoxal-dependent decarboxylase domain-containing protein 1

      See identical proteins and their annotated locations for NP_001095329.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151480
      UniProtKB/Swiss-Prot
      A7MBC2
      Related
      ENSBTAP00000043763.3, ENSBTAT00000046463.4
      Conserved Domains (1) summary
      cl18945
      Location:204 → 395
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      13731837..13786695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010819286.4 → XP_010817588.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

      Related
      ENSBTAP00000064477.2, ENSBTAT00000082002.2
      Conserved Domains (1) summary
      cl18945
      Location:177 → 368
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    2. XM_059881189.1 → XP_059737172.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M7W0
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A7MBC2.1 GenPept UniProtKB/Swiss-Prot:A7MBC2

    Gene LinkOut

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