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    LOC7471570 probable histone H2A variant 3 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7471570, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7471570
    Gene description
    probable histone H2A variant 3
    Locus tag
    POPTR_006G249300v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (24882217..24884935, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (25587356..25590018, complement)

    Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 10 Neighboring gene 3-ketoacyl-CoA synthase 11 Neighboring gene probable histone H2A variant 3 Neighboring gene EG45-like domain containing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable histone H2A variant 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      24882217..24884935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002309564.4 → XP_002309600.1  probable histone H2A variant 3

      See identical proteins and their annotated locations for XP_002309600.1

      UniProtKB/TrEMBL
      A9PIK3
      Conserved Domains (1) summary
      PLN00154
      Location:1 → 134
      PLN00154; histone H2A; Provisional
    Nucleotide Protein
    Heading Accession and Version

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