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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2377041

Current Build 155

Released April 9, 2021

Organism
Homo sapiens
Position
chr1:2796762 (GRCh38.p13) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>T
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.357312 (94577/264690, TOPMED)
T=0.433507 (106640/245994, ALFA)
T=0.357073 (49981/139974, GnomAD) (+ 19 more)
T=0.31563 (24789/78538, PAGE_STUDY)
T=0.44117 (7394/16760, 8.3KJPN)
T=0.2979 (1492/5008, 1000G)
T=0.3837 (1719/4480, Estonian)
T=0.4390 (1692/3854, ALSPAC)
T=0.4258 (1579/3708, TWINSUK)
T=0.4590 (1345/2930, KOREAN)
T=0.3608 (752/2084, HGDP_Stanford)
T=0.2929 (553/1888, HapMap)
T=0.479 (478/998, GoNL)
T=0.396 (297/750, PRJEB37584)
T=0.423 (265/626, Chileans)
T=0.390 (234/600, NorthernSweden)
C=0.343 (96/280, SGDP_PRJ)
T=0.301 (65/216, Qatari)
T=0.375 (81/216, Vietnamese)
C=0.44 (38/86, Ancient Sardinia)
T=0.42 (17/40, GENOME_DK)
C=0.35 (12/34, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
TTC34 : Intron Variant
Publications
1 citation
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p13 chr 1 NC_000001.11:g.2796762C>T
GRCh37.p13 chr 1 NC_000001.10:g.2713327C>T
Gene: TTC34, tetratricopeptide repeat domain 34 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
TTC34 transcript NM_001242672.2:c.784+3282…

NM_001242672.2:c.784+3282G>A

N/A Intron Variant
TTC34 transcript variant X1 XM_016999990.1:c. N/A Genic Upstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20201027095038
Population Group Sample Size Ref Allele Alt Allele
Total Global 245994 C=0.566493 T=0.433507
European Sub 213648 C=0.552072 T=0.447928
African Sub 7830 C=0.8052 T=0.1948
African Others Sub 278 C=0.888 T=0.112
African American Sub 7552 C=0.8022 T=0.1978
Asian Sub 828 C=0.650 T=0.350
East Asian Sub 650 C=0.631 T=0.369
Other Asian Sub 178 C=0.719 T=0.281
Latin American 1 Sub 988 C=0.606 T=0.394
Latin American 2 Sub 9056 C=0.5627 T=0.4373
South Asian Sub 5060 C=0.7433 T=0.2567
Other Sub 8584 C=0.5948 T=0.4052


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.642688 T=0.357312
Allele Frequency Aggregator Total Global 245994 C=0.566493 T=0.433507
Allele Frequency Aggregator European Sub 213648 C=0.552072 T=0.447928
Allele Frequency Aggregator Latin American 2 Sub 9056 C=0.5627 T=0.4373
Allele Frequency Aggregator Other Sub 8584 C=0.5948 T=0.4052
Allele Frequency Aggregator African Sub 7830 C=0.8052 T=0.1948
Allele Frequency Aggregator South Asian Sub 5060 C=0.7433 T=0.2567
Allele Frequency Aggregator Latin American 1 Sub 988 C=0.606 T=0.394
Allele Frequency Aggregator Asian Sub 828 C=0.650 T=0.350
gnomAD - Genomes Global Study-wide 139974 C=0.642927 T=0.357073
gnomAD - Genomes European Sub 75804 C=0.56555 T=0.43445
gnomAD - Genomes African Sub 41934 C=0.81015 T=0.18985
gnomAD - Genomes American Sub 13642 C=0.59801 T=0.40199
gnomAD - Genomes Ashkenazi Jewish Sub 3324 C=0.5111 T=0.4889
gnomAD - Genomes East Asian Sub 3122 C=0.6323 T=0.3677
gnomAD - Genomes Other Sub 2148 C=0.6136 T=0.3864
The PAGE Study Global Study-wide 78538 C=0.68437 T=0.31563
The PAGE Study AfricanAmerican Sub 32456 C=0.80318 T=0.19682
The PAGE Study Mexican Sub 10774 C=0.55764 T=0.44236
The PAGE Study Asian Sub 8302 C=0.5811 T=0.4189
The PAGE Study PuertoRican Sub 7912 C=0.6040 T=0.3960
The PAGE Study NativeHawaiian Sub 4522 C=0.6351 T=0.3649
The PAGE Study Cuban Sub 4216 C=0.5918 T=0.4082
The PAGE Study Dominican Sub 3822 C=0.6570 T=0.3430
The PAGE Study CentralAmerican Sub 2444 C=0.6236 T=0.3764
The PAGE Study SouthAmerican Sub 1980 C=0.6283 T=0.3717
The PAGE Study NativeAmerican Sub 1258 C=0.6129 T=0.3871
The PAGE Study SouthAsian Sub 852 C=0.766 T=0.234
8.3KJPN JAPANESE Study-wide 16760 C=0.55883 T=0.44117
1000Genomes Global Study-wide 5008 C=0.7021 T=0.2979
1000Genomes African Sub 1322 C=0.8608 T=0.1392
1000Genomes East Asian Sub 1008 C=0.6429 T=0.3571
1000Genomes Europe Sub 1006 C=0.5586 T=0.4414
1000Genomes South Asian Sub 978 C=0.763 T=0.237
1000Genomes American Sub 694 C=0.608 T=0.392
Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.6163 T=0.3837
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.5610 T=0.4390
UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.5742 T=0.4258
KOREAN population from KRGDB KOREAN Study-wide 2930 C=0.5410 T=0.4590
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 C=0.6392 T=0.3608
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 C=0.617 T=0.383
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 C=0.684 T=0.316
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 C=0.597 T=0.403
HGDP-CEPH-db Supplement 1 Europe Sub 320 C=0.525 T=0.475
HGDP-CEPH-db Supplement 1 Africa Sub 242 C=0.769 T=0.231
HGDP-CEPH-db Supplement 1 America Sub 216 C=0.588 T=0.412
HGDP-CEPH-db Supplement 1 Oceania Sub 72 C=0.96 T=0.04
HapMap Global Study-wide 1888 C=0.7071 T=0.2929
HapMap American Sub 766 C=0.663 T=0.337
HapMap African Sub 692 C=0.841 T=0.159
HapMap Asian Sub 254 C=0.575 T=0.425
HapMap Europe Sub 176 C=0.562 T=0.438
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.521 T=0.479
CNV burdens in cranial meningiomas Global Study-wide 750 C=0.604 T=0.396
CNV burdens in cranial meningiomas CRM Sub 750 C=0.604 T=0.396
Chileans Chilean Study-wide 626 C=0.577 T=0.423
Northern Sweden ACPOP Study-wide 600 C=0.610 T=0.390
SGDP_PRJ Global Study-wide 280 C=0.343 T=0.657
Qatari Global Study-wide 216 C=0.699 T=0.301
A Vietnamese Genetic Variation Database Global Study-wide 216 C=0.625 T=0.375
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 86 C=0.44 T=0.56
The Danish reference pan genome Danish Study-wide 40 C=0.57 T=0.42
Siberian Global Study-wide 34 C=0.35 T=0.65
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= T
GRCh38.p13 chr 1 NC_000001.11:g.2796762= NC_000001.11:g.2796762C>T
GRCh37.p13 chr 1 NC_000001.10:g.2713327= NC_000001.10:g.2713327C>T
TTC34 transcript NM_001242672.2:c.784+3282= NM_001242672.2:c.784+3282G>A
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

124 SubSNP, 22 Frequency submissions
No Submitter Submission ID Date (Build)
1 TSC-CSHL ss3336457 Sep 28, 2001 (100)
2 SC_JCM ss5674755 Feb 20, 2003 (111)
3 BCM_SSAHASNP ss9817065 Jul 11, 2003 (116)
4 SSAHASNP ss20465187 Apr 05, 2004 (121)
5 ABI ss43994695 Mar 13, 2006 (126)
6 ILLUMINA ss65718091 Oct 15, 2006 (127)
7 AFFY ss66190747 Dec 03, 2006 (127)
8 ILLUMINA ss67250239 Dec 03, 2006 (127)
9 ILLUMINA ss67647843 Dec 03, 2006 (127)
10 ILLUMINA ss68203674 Dec 12, 2006 (127)
11 ILLUMINA ss70728577 May 23, 2008 (130)
12 ILLUMINA ss71297757 May 17, 2007 (127)
13 ILLUMINA ss74868385 Dec 07, 2007 (129)
14 AFFY ss76266445 Dec 08, 2007 (130)
15 HGSV ss82432075 Dec 14, 2007 (130)
16 KRIBB_YJKIM ss84043166 Dec 14, 2007 (130)
17 HUMANGENOME_JCVI ss97914958 Feb 02, 2009 (130)
18 1000GENOMES ss107943042 Jan 22, 2009 (130)
19 ILLUMINA ss120244561 Dec 01, 2009 (131)
20 ENSEMBL ss138988073 Dec 01, 2009 (131)
21 ILLUMINA ss153907936 Dec 01, 2009 (131)
22 GMI ss154547156 Dec 01, 2009 (131)
23 ILLUMINA ss159385797 Dec 01, 2009 (131)
24 ILLUMINA ss160541471 Dec 01, 2009 (131)
25 COMPLETE_GENOMICS ss163723765 Jul 04, 2010 (132)
26 COMPLETE_GENOMICS ss165997401 Jul 04, 2010 (132)
27 AFFY ss173038677 Jul 04, 2010 (132)
28 ILLUMINA ss173315452 Jul 04, 2010 (132)
29 BCM-HGSC-SUB ss205047420 Jul 04, 2010 (132)
30 1000GENOMES ss218197341 Jul 14, 2010 (132)
31 1000GENOMES ss230400375 Jul 14, 2010 (132)
32 1000GENOMES ss238119515 Jul 15, 2010 (132)
33 ILLUMINA ss244255177 Jul 04, 2010 (132)
34 GMI ss275688012 May 04, 2012 (137)
35 PJP ss290496703 May 09, 2011 (134)
36 ILLUMINA ss480550342 May 04, 2012 (137)
37 ILLUMINA ss480564394 May 04, 2012 (137)
38 ILLUMINA ss481380304 Sep 08, 2015 (146)
39 ILLUMINA ss485070902 May 04, 2012 (137)
40 ILLUMINA ss537083884 Sep 08, 2015 (146)
41 TISHKOFF ss553725551 Apr 25, 2013 (138)
42 SSMP ss647529274 Apr 25, 2013 (138)
43 ILLUMINA ss778867236 Sep 08, 2015 (146)
44 ILLUMINA ss782981723 Sep 08, 2015 (146)
45 ILLUMINA ss783942738 Sep 08, 2015 (146)
46 ILLUMINA ss832238269 Sep 08, 2015 (146)
47 ILLUMINA ss832897563 Jul 12, 2019 (153)
48 ILLUMINA ss834328094 Sep 08, 2015 (146)
49 EVA-GONL ss974785881 Aug 21, 2014 (142)
50 JMKIDD_LAB ss1067620982 Aug 21, 2014 (142)
51 1000GENOMES ss1289412139 Aug 21, 2014 (142)
52 DDI ss1425690009 Apr 01, 2015 (144)
53 EVA_GENOME_DK ss1573856617 Apr 01, 2015 (144)
54 EVA_DECODE ss1584145461 Apr 01, 2015 (144)
55 EVA_UK10K_ALSPAC ss1599407576 Apr 01, 2015 (144)
56 EVA_UK10K_TWINSUK ss1642401609 Apr 01, 2015 (144)
57 EVA_SVP ss1712306196 Apr 01, 2015 (144)
58 ILLUMINA ss1751913529 Sep 08, 2015 (146)
59 HAMMER_LAB ss1793752944 Sep 08, 2015 (146)
60 WEILL_CORNELL_DGM ss1917980653 Feb 12, 2016 (147)
61 ILLUMINA ss1945982483 Feb 12, 2016 (147)
62 ILLUMINA ss1958233333 Feb 12, 2016 (147)
63 GENOMED ss1966669643 Jul 19, 2016 (147)
64 JJLAB ss2019506647 Sep 14, 2016 (149)
65 ILLUMINA ss2094839998 Dec 20, 2016 (150)
66 ILLUMINA ss2094949671 Dec 20, 2016 (150)
67 USC_VALOUEV ss2147496402 Dec 20, 2016 (150)
68 HUMAN_LONGEVITY ss2159493809 Dec 20, 2016 (150)
69 TOPMED ss2321649683 Dec 20, 2016 (150)
70 SYSTEMSBIOZJU ss2624269184 Nov 08, 2017 (151)
71 ILLUMINA ss2632467235 Nov 08, 2017 (151)
72 ILLUMINA ss2634995435 Nov 08, 2017 (151)
73 GRF ss2697389864 Nov 08, 2017 (151)
74 ILLUMINA ss2710663848 Nov 08, 2017 (151)
75 GNOMAD ss2750866930 Nov 08, 2017 (151)
76 AFFY ss2984842182 Nov 08, 2017 (151)
77 SWEGEN ss2986185786 Nov 08, 2017 (151)
78 ILLUMINA ss3021046242 Nov 08, 2017 (151)
79 BIOINF_KMB_FNS_UNIBA ss3023517148 Nov 08, 2017 (151)
80 TOPMED ss3066896251 Nov 08, 2017 (151)
81 CSHL ss3343283877 Nov 08, 2017 (151)
82 ILLUMINA ss3625523704 Oct 11, 2018 (152)
83 ILLUMINA ss3626009755 Oct 11, 2018 (152)
84 ILLUMINA ss3630506847 Oct 11, 2018 (152)
85 ILLUMINA ss3632878303 Oct 11, 2018 (152)
86 ILLUMINA ss3633571845 Oct 11, 2018 (152)
87 ILLUMINA ss3634302968 Oct 11, 2018 (152)
88 ILLUMINA ss3635266035 Oct 11, 2018 (152)
89 ILLUMINA ss3635979317 Oct 11, 2018 (152)
90 ILLUMINA ss3637016382 Oct 11, 2018 (152)
91 ILLUMINA ss3637733288 Oct 11, 2018 (152)
92 ILLUMINA ss3638888026 Oct 11, 2018 (152)
93 ILLUMINA ss3639756905 Oct 11, 2018 (152)
94 ILLUMINA ss3640010333 Oct 11, 2018 (152)
95 ILLUMINA ss3642747517 Oct 11, 2018 (152)
96 ILLUMINA ss3643810833 Oct 11, 2018 (152)
97 ILLUMINA ss3644478336 Oct 11, 2018 (152)
98 URBANLAB ss3646585103 Oct 11, 2018 (152)
99 ILLUMINA ss3651368688 Oct 11, 2018 (152)
100 ILLUMINA ss3651368689 Oct 11, 2018 (152)
101 EGCUT_WGS ss3654286767 Jul 12, 2019 (153)
102 EVA_DECODE ss3686027962 Jul 12, 2019 (153)
103 ILLUMINA ss3724989956 Jul 12, 2019 (153)
104 ACPOP ss3726731192 Jul 12, 2019 (153)
105 ILLUMINA ss3744040920 Jul 12, 2019 (153)
106 ILLUMINA ss3744603894 Jul 12, 2019 (153)
107 EVA ss3745742078 Jul 12, 2019 (153)
108 PAGE_CC ss3770779965 Jul 12, 2019 (153)
109 ILLUMINA ss3772105623 Jul 12, 2019 (153)
110 PACBIO ss3783306784 Jul 12, 2019 (153)
111 PACBIO ss3788983853 Jul 12, 2019 (153)
112 PACBIO ss3793856471 Jul 12, 2019 (153)
113 KHV_HUMAN_GENOMES ss3798764743 Jul 12, 2019 (153)
114 EVA ss3825989106 Apr 25, 2020 (154)
115 EVA ss3836381839 Apr 25, 2020 (154)
116 EVA ss3841785941 Apr 25, 2020 (154)
117 HGDP ss3847322286 Apr 25, 2020 (154)
118 SGDP_PRJ ss3848046424 Apr 25, 2020 (154)
119 KRGDB ss3892905474 Apr 25, 2020 (154)
120 EVA ss3984450973 Apr 25, 2021 (155)
121 EVA ss3984774473 Apr 25, 2021 (155)
122 EVA ss4016889697 Apr 25, 2021 (155)
123 TOPMED ss4437005209 Apr 25, 2021 (155)
124 TOMMO_GENOMICS ss5142155970 Apr 25, 2021 (155)
125 1000Genomes NC_000001.10 - 2713327 Oct 11, 2018 (152)
126 The Avon Longitudinal Study of Parents and Children NC_000001.10 - 2713327 Oct 11, 2018 (152)
127 Chileans NC_000001.10 - 2713327 Apr 25, 2020 (154)
128 Genetic variation in the Estonian population NC_000001.10 - 2713327 Oct 11, 2018 (152)
129 The Danish reference pan genome NC_000001.10 - 2713327 Apr 25, 2020 (154)
130 gnomAD - Genomes NC_000001.11 - 2796762 Apr 25, 2021 (155)
131 Genome of the Netherlands Release 5 NC_000001.10 - 2713327 Apr 25, 2020 (154)
132 HGDP-CEPH-db Supplement 1 NC_000001.9 - 2703187 Apr 25, 2020 (154)
133 HapMap NC_000001.11 - 2796762 Apr 25, 2020 (154)
134 KOREAN population from KRGDB NC_000001.10 - 2713327 Apr 25, 2020 (154)
135 Northern Sweden NC_000001.10 - 2713327 Jul 12, 2019 (153)
136 The PAGE Study NC_000001.11 - 2796762 Jul 12, 2019 (153)
137 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000001.10 - 2713327 Apr 25, 2021 (155)
138 CNV burdens in cranial meningiomas NC_000001.10 - 2713327 Apr 25, 2021 (155)
139 Qatari NC_000001.10 - 2713327 Apr 25, 2020 (154)
140 SGDP_PRJ NC_000001.10 - 2713327 Apr 25, 2020 (154)
141 Siberian NC_000001.10 - 2713327 Apr 25, 2020 (154)
142 8.3KJPN NC_000001.10 - 2713327 Apr 25, 2021 (155)
143 TopMed NC_000001.11 - 2796762 Apr 25, 2021 (155)
144 UK 10K study - Twins NC_000001.10 - 2713327 Oct 11, 2018 (152)
145 A Vietnamese Genetic Variation Database NC_000001.10 - 2713327 Jul 12, 2019 (153)
146 ALFA NC_000001.11 - 2796762 Apr 25, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs56431443 May 23, 2008 (130)
rs56684633 May 23, 2008 (130)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss82432075, ss3638888026, ss3639756905, ss3643810833 NC_000001.8:2736484:C:T NC_000001.11:2796761:C:T (self)
178, ss66190747, ss76266445, ss107943042, ss163723765, ss165997401, ss173038677, ss205047420, ss275688012, ss290496703, ss480550342, ss1584145461, ss1712306196, ss2094839998, ss2634995435, ss3642747517, ss3847322286 NC_000001.9:2703186:C:T NC_000001.11:2796761:C:T (self)
79080, 32324, 79, 25015, 1363851, 13600, 82868, 16057, 400, 273, 22583, 63404, 12756, 125277, 32324, 6615, ss218197341, ss230400375, ss238119515, ss480564394, ss481380304, ss485070902, ss537083884, ss553725551, ss647529274, ss778867236, ss782981723, ss783942738, ss832238269, ss832897563, ss834328094, ss974785881, ss1067620982, ss1289412139, ss1425690009, ss1573856617, ss1599407576, ss1642401609, ss1751913529, ss1793752944, ss1917980653, ss1945982483, ss1958233333, ss1966669643, ss2019506647, ss2094949671, ss2147496402, ss2321649683, ss2624269184, ss2632467235, ss2697389864, ss2710663848, ss2750866930, ss2984842182, ss2986185786, ss3021046242, ss3343283877, ss3625523704, ss3626009755, ss3630506847, ss3632878303, ss3633571845, ss3634302968, ss3635266035, ss3635979317, ss3637016382, ss3637733288, ss3640010333, ss3644478336, ss3651368688, ss3651368689, ss3654286767, ss3726731192, ss3744040920, ss3744603894, ss3745742078, ss3772105623, ss3783306784, ss3788983853, ss3793856471, ss3825989106, ss3836381839, ss3848046424, ss3892905474, ss3984450973, ss3984774473, ss4016889697, ss5142155970 NC_000001.10:2713326:C:T NC_000001.11:2796761:C:T (self)
606466, 1422, 1434, 376250, 611544, 2128836089, ss2159493809, ss3023517148, ss3066896251, ss3646585103, ss3686027962, ss3724989956, ss3770779965, ss3798764743, ss3841785941, ss4437005209 NC_000001.11:2796761:C:T NC_000001.11:2796761:C:T (self)
ss9817065, ss20465187 NT_004321.15:20102:C:T NC_000001.11:2796761:C:T (self)
ss3336457, ss5674755, ss43994695, ss65718091, ss67250239, ss67647843, ss68203674, ss70728577, ss71297757, ss74868385, ss84043166, ss97914958, ss120244561, ss138988073, ss153907936, ss154547156, ss159385797, ss160541471, ss173315452, ss244255177 NT_004350.19:2191958:C:T NC_000001.11:2796761:C:T (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs2377041
PMID Title Author Year Journal
24727690 Single nucleotide polymorphism (SNP)-strings: an alternative method for assessing genetic associations. Goodin DS et al. 2014 PloS one
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post596+ae089ad