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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2887286

Current Build 155

Released April 9, 2021

Organism
Homo sapiens
Position
chr1:1220751 (GRCh38.p13) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
T>C
Variation Type
SNV Single Nucleotide Variation
Frequency
C=0.336465 (89059/264690, TOPMED)
C=0.203246 (46317/227886, ALFA)
C=0.300883 (42108/139948, GnomAD) (+ 19 more)
C=0.368064 (47149/128100, GnomAD_exome)
T=0.15169 (2542/16758, 8.3KJPN)
C=0.41307 (4457/10790, ExAC)
T=0.4888 (2448/5008, 1000G)
C=0.1516 (679/4480, Estonian)
C=0.1689 (651/3854, ALSPAC)
C=0.1699 (630/3708, TWINSUK)
T=0.1867 (547/2930, KOREAN)
C=0.4938 (1029/2084, HGDP_Stanford)
C=0.4857 (918/1890, HapMap)
T=0.1867 (342/1832, Korea1K)
C=0.143 (143/998, GoNL)
C=0.193 (116/600, NorthernSweden)
T=0.261 (106/406, SGDP_PRJ)
C=0.236 (51/216, Qatari)
T=0.103 (22/214, Vietnamese)
C=0.20 (14/70, Ancient Sardinia)
C=0.15 (6/40, GENOME_DK)
T=0.45 (10/22, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
SDF4 : Intron Variant
Publications
1 citation
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p13 chr 1 NC_000001.11:g.1220751T>C
GRCh37.p13 chr 1 NC_000001.10:g.1156131T>C
SDF4 RefSeqGene NG_030007.1:g.16317A>G
Gene: SDF4, stromal cell derived factor 4 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
SDF4 transcript variant 2 NM_016176.6:c.557-1824A>G N/A Intron Variant
SDF4 transcript variant 1 NM_016547.3:c.557-1824A>G N/A Intron Variant
SDF4 transcript variant X2 XM_011541556.1:c.578-21A>G N/A Intron Variant
SDF4 transcript variant X1 XM_024447473.1:c.578-1824…

XM_024447473.1:c.578-1824A>G

N/A Intron Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20201027095038
Population Group Sample Size Ref Allele Alt Allele
Total Global 227886 T=0.796754 C=0.203246
European Sub 193578 T=0.837192 C=0.162808
African Sub 10944 T=0.53655 C=0.46345
African Others Sub 364 T=0.437 C=0.563
African American Sub 10580 T=0.53998 C=0.46002
Asian Sub 842 T=0.131 C=0.869
East Asian Sub 634 T=0.142 C=0.858
Other Asian Sub 208 T=0.096 C=0.904
Latin American 1 Sub 906 T=0.658 C=0.342
Latin American 2 Sub 6998 T=0.4819 C=0.5181
South Asian Sub 5050 T=0.5055 C=0.4945
Other Sub 9568 T=0.7320 C=0.2680


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 T=0.663535 C=0.336465
gnomAD - Genomes Global Study-wide 139948 T=0.699117 C=0.300883
gnomAD - Genomes European Sub 75808 T=0.83787 C=0.16213
gnomAD - Genomes African Sub 41908 T=0.52004 C=0.47996
gnomAD - Genomes American Sub 13638 T=0.57244 C=0.42756
gnomAD - Genomes Ashkenazi Jewish Sub 3318 T=0.8357 C=0.1643
gnomAD - Genomes East Asian Sub 3126 T=0.1603 C=0.8397
gnomAD - Genomes Other Sub 2150 T=0.6735 C=0.3265
gnomAD - Exomes Global Study-wide 128100 T=0.631936 C=0.368064
gnomAD - Exomes European Sub 52752 T=0.83800 C=0.16200
gnomAD - Exomes Asian Sub 32816 T=0.38685 C=0.61315
gnomAD - Exomes American Sub 24356 T=0.46149 C=0.53851
gnomAD - Exomes Ashkenazi Jewish Sub 8096 T=0.8382 C=0.1618
gnomAD - Exomes African Sub 6088 T=0.5145 C=0.4855
gnomAD - Exomes Other Sub 3992 T=0.7244 C=0.2756
8.3KJPN JAPANESE Study-wide 16758 T=0.15169 C=0.84831
ExAC Global Study-wide 10790 T=0.58693 C=0.41307
ExAC Asian Sub 7646 T=0.4962 C=0.5038
ExAC Europe Sub 2744 T=0.8342 C=0.1658
ExAC African Sub 190 T=0.589 C=0.411
ExAC Other Sub 118 T=0.703 C=0.297
ExAC American Sub 92 T=0.60 C=0.40
1000Genomes Global Study-wide 5008 T=0.4888 C=0.5112
1000Genomes African Sub 1322 T=0.4713 C=0.5287
1000Genomes East Asian Sub 1008 T=0.1538 C=0.8462
1000Genomes Europe Sub 1006 T=0.8241 C=0.1759
1000Genomes South Asian Sub 978 T=0.468 C=0.532
1000Genomes American Sub 694 T=0.552 C=0.448
Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.8484 C=0.1516
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.8311 C=0.1689
UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.8301 C=0.1699
KOREAN population from KRGDB KOREAN Study-wide 2930 T=0.1867 C=0.8133
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 T=0.5062 C=0.4938
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 T=0.209 C=0.791
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 T=0.609 C=0.391
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 T=0.820 C=0.180
HGDP-CEPH-db Supplement 1 Europe Sub 320 T=0.844 C=0.156
HGDP-CEPH-db Supplement 1 Africa Sub 242 T=0.479 C=0.521
HGDP-CEPH-db Supplement 1 America Sub 216 T=0.083 C=0.917
HGDP-CEPH-db Supplement 1 Oceania Sub 72 T=0.19 C=0.81
HapMap Global Study-wide 1890 T=0.5143 C=0.4857
HapMap American Sub 770 T=0.516 C=0.484
HapMap African Sub 692 T=0.559 C=0.441
HapMap Asian Sub 252 T=0.143 C=0.857
HapMap Europe Sub 176 T=0.864 C=0.136
Korean Genome Project KOREAN Study-wide 1832 T=0.1867 C=0.8133
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 T=0.857 C=0.143
Northern Sweden ACPOP Study-wide 600 T=0.807 C=0.193
SGDP_PRJ Global Study-wide 406 T=0.261 C=0.739
Qatari Global Study-wide 216 T=0.764 C=0.236
A Vietnamese Genetic Variation Database Global Study-wide 214 T=0.103 C=0.897
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 70 T=0.80 C=0.20
The Danish reference pan genome Danish Study-wide 40 T=0.85 C=0.15
Siberian Global Study-wide 22 T=0.45 C=0.55
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement T= C
GRCh38.p13 chr 1 NC_000001.11:g.1220751= NC_000001.11:g.1220751T>C
GRCh37.p13 chr 1 NC_000001.10:g.1156131= NC_000001.10:g.1156131T>C
SDF4 RefSeqGene NG_030007.1:g.16317= NG_030007.1:g.16317A>G
SDF4 transcript variant 2 NM_016176.3:c.578-1824= NM_016176.3:c.578-1824A>G
SDF4 transcript variant 2 NM_016176.6:c.557-1824= NM_016176.6:c.557-1824A>G
SDF4 transcript variant 1 NM_016547.2:c.578-1824= NM_016547.2:c.578-1824A>G
SDF4 transcript variant 1 NM_016547.3:c.557-1824= NM_016547.3:c.557-1824A>G
SDF4 transcript variant X1 XM_005244756.1:c.578-21= XM_005244756.1:c.578-21A>G
SDF4 transcript variant X2 XM_011541556.1:c.578-21= XM_011541556.1:c.578-21A>G
SDF4 transcript variant X1 XM_024447473.1:c.578-1824= XM_024447473.1:c.578-1824A>G
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

114 SubSNP, 22 Frequency submissions
No Submitter Submission ID Date (Build)
1 TSC-CSHL ss4079447 Nov 05, 2001 (101)
2 WI_SSAHASNP ss6879584 Feb 20, 2003 (111)
3 AFFY ss66416875 Nov 29, 2006 (127)
4 ILLUMINA ss66583840 Nov 29, 2006 (127)
5 ILLUMINA ss67281235 Nov 29, 2006 (127)
6 ILLUMINA ss67683353 Nov 29, 2006 (127)
7 PERLEGEN ss68756327 May 16, 2007 (127)
8 ILLUMINA ss70759754 May 27, 2008 (130)
9 ILLUMINA ss71333422 May 16, 2007 (127)
10 ILLUMINA ss74946315 Dec 07, 2007 (129)
11 AFFY ss76179473 Dec 08, 2007 (130)
12 ILLUMINA ss79152548 Dec 16, 2007 (130)
13 HGSV ss80468511 Dec 16, 2007 (130)
14 KRIBB_YJKIM ss84115544 Dec 16, 2007 (130)
15 HGSV ss84779479 Dec 16, 2007 (130)
16 BGI ss105112261 Dec 01, 2009 (131)
17 1000GENOMES ss107938631 Jan 22, 2009 (130)
18 1000GENOMES ss109942197 Jan 24, 2009 (130)
19 ILLUMINA-UK ss118440683 Feb 14, 2009 (130)
20 ILLUMINA ss122135920 Dec 01, 2009 (131)
21 ILLUMINA ss154243981 Dec 01, 2009 (131)
22 ILLUMINA ss159420858 Dec 01, 2009 (131)
23 ILLUMINA ss160595467 Dec 01, 2009 (131)
24 COMPLETE_GENOMICS ss162984308 Jul 04, 2010 (132)
25 COMPLETE_GENOMICS ss165983274 Jul 04, 2010 (132)
26 ILLUMINA ss171465505 Jul 04, 2010 (132)
27 AFFY ss172726434 Jun 24, 2010 (142)
28 ILLUMINA ss173523732 Jul 04, 2010 (132)
29 BUSHMAN ss197890188 Jul 04, 2010 (132)
30 1000GENOMES ss218192453 Jul 14, 2010 (132)
31 1000GENOMES ss230396779 Jul 14, 2010 (132)
32 1000GENOMES ss238116276 Jul 15, 2010 (132)
33 ILLUMINA ss244292661 Jul 04, 2010 (132)
34 BL ss252866581 May 09, 2011 (134)
35 GMI ss275682742 May 04, 2012 (137)
36 GMI ss283988123 Apr 25, 2013 (138)
37 PJP ss290494470 May 09, 2011 (134)
38 ILLUMINA ss480707158 May 04, 2012 (137)
39 ILLUMINA ss480722803 May 04, 2012 (137)
40 ILLUMINA ss481596285 Sep 08, 2015 (146)
41 ILLUMINA ss485148380 May 04, 2012 (137)
42 ILLUMINA ss537144579 Sep 08, 2015 (146)
43 TISHKOFF ss553714939 Apr 25, 2013 (138)
44 SSMP ss647519207 Apr 25, 2013 (138)
45 ILLUMINA ss779040529 Sep 08, 2015 (146)
46 ILLUMINA ss783020463 Sep 08, 2015 (146)
47 ILLUMINA ss783980410 Sep 08, 2015 (146)
48 ILLUMINA ss825483066 Apr 01, 2015 (144)
49 ILLUMINA ss832277973 Sep 08, 2015 (146)
50 ILLUMINA ss832932506 Jul 12, 2019 (153)
51 ILLUMINA ss834503358 Sep 08, 2015 (146)
52 EVA-GONL ss974773052 Aug 21, 2014 (142)
53 JMKIDD_LAB ss1067614247 Aug 21, 2014 (142)
54 1000GENOMES ss1289354574 Aug 21, 2014 (142)
55 DDI ss1425686085 Apr 01, 2015 (144)
56 EVA_GENOME_DK ss1573852423 Apr 01, 2015 (144)
57 EVA_DECODE ss1584132989 Apr 01, 2015 (144)
58 EVA_UK10K_ALSPAC ss1599384523 Apr 01, 2015 (144)
59 EVA_UK10K_TWINSUK ss1642378556 Apr 01, 2015 (144)
60 EVA_EXAC ss1685227246 Apr 01, 2015 (144)
61 EVA_SVP ss1712305591 Apr 01, 2015 (144)
62 ILLUMINA ss1751865161 Sep 08, 2015 (146)
63 HAMMER_LAB ss1793718955 Sep 08, 2015 (146)
64 WEILL_CORNELL_DGM ss1917965223 Feb 12, 2016 (147)
65 GENOMED ss1966667864 Jul 19, 2016 (147)
66 JJLAB ss2019500419 Sep 14, 2016 (149)
67 USC_VALOUEV ss2147487367 Dec 20, 2016 (150)
68 HUMAN_LONGEVITY ss2159394894 Dec 20, 2016 (150)
69 TOPMED ss2321534200 Dec 20, 2016 (150)
70 SYSTEMSBIOZJU ss2624265839 Nov 08, 2017 (151)
71 ILLUMINA ss2632465871 Nov 08, 2017 (151)
72 ILLUMINA ss2634995318 Nov 08, 2017 (151)
73 GRF ss2697378144 Nov 08, 2017 (151)
74 ILLUMINA ss2710663593 Nov 08, 2017 (151)
75 GNOMAD ss2731002318 Nov 08, 2017 (151)
76 GNOMAD ss2746175118 Nov 08, 2017 (151)
77 GNOMAD ss2750683794 Nov 08, 2017 (151)
78 SWEGEN ss2986156164 Nov 08, 2017 (151)
79 BIOINF_KMB_FNS_UNIBA ss3023514531 Nov 08, 2017 (151)
80 TOPMED ss3066497727 Nov 08, 2017 (151)
81 CSHL ss3343274911 Nov 08, 2017 (151)
82 ILLUMINA ss3626007303 Oct 11, 2018 (152)
83 ILLUMINA ss3630505868 Oct 11, 2018 (152)
84 ILLUMINA ss3632878078 Oct 11, 2018 (152)
85 ILLUMINA ss3633571510 Oct 11, 2018 (152)
86 ILLUMINA ss3634302153 Oct 11, 2018 (152)
87 ILLUMINA ss3635265713 Oct 11, 2018 (152)
88 ILLUMINA ss3635978766 Oct 11, 2018 (152)
89 ILLUMINA ss3637016053 Oct 11, 2018 (152)
90 ILLUMINA ss3637732560 Oct 11, 2018 (152)
91 ILLUMINA ss3638887884 Oct 11, 2018 (152)
92 ILLUMINA ss3639440650 Oct 11, 2018 (152)
93 ILLUMINA ss3640009519 Oct 11, 2018 (152)
94 ILLUMINA ss3642746838 Oct 11, 2018 (152)
95 OMUKHERJEE_ADBS ss3646219049 Oct 11, 2018 (152)
96 EGCUT_WGS ss3654267240 Jul 12, 2019 (153)
97 EVA_DECODE ss3686000128 Jul 12, 2019 (153)
98 ACPOP ss3726719672 Jul 12, 2019 (153)
99 ILLUMINA ss3744603084 Jul 12, 2019 (153)
100 EVA ss3745725558 Jul 12, 2019 (153)
101 ILLUMINA ss3772104839 Jul 12, 2019 (153)
102 KHV_HUMAN_GENOMES ss3798748256 Jul 12, 2019 (153)
103 EVA ss3825983112 Apr 25, 2020 (154)
104 HGDP ss3847322135 Apr 25, 2020 (154)
105 SGDP_PRJ ss3848006882 Apr 25, 2020 (154)
106 KRGDB ss3892849986 Apr 25, 2020 (154)
107 KOGIC ss3943638635 Apr 25, 2020 (154)
108 FSA-LAB ss3983910815 Apr 25, 2021 (155)
109 EVA ss3984774119 Apr 25, 2021 (155)
110 EVA ss3986091433 Apr 25, 2021 (155)
111 EVA ss4016889165 Apr 25, 2021 (155)
112 TOPMED ss4436551714 Apr 25, 2021 (155)
113 TOMMO_GENOMICS ss5142072106 Apr 25, 2021 (155)
114 EVA ss5237158429 Apr 25, 2021 (155)
115 1000Genomes NC_000001.10 - 1156131 Oct 11, 2018 (152)
116 The Avon Longitudinal Study of Parents and Children NC_000001.10 - 1156131 Oct 11, 2018 (152)
117 Genetic variation in the Estonian population NC_000001.10 - 1156131 Oct 11, 2018 (152)
118 ExAC NC_000001.10 - 1156131 Oct 11, 2018 (152)
119 The Danish reference pan genome NC_000001.10 - 1156131 Apr 25, 2020 (154)
120 gnomAD - Genomes NC_000001.11 - 1220751 Apr 25, 2021 (155)
121 gnomAD - Exomes NC_000001.10 - 1156131 Jul 12, 2019 (153)
122 Genome of the Netherlands Release 5 NC_000001.10 - 1156131 Apr 25, 2020 (154)
123 HGDP-CEPH-db Supplement 1 NC_000001.9 - 1145994 Apr 25, 2020 (154)
124 HapMap NC_000001.11 - 1220751 Apr 25, 2020 (154)
125 KOREAN population from KRGDB NC_000001.10 - 1156131 Apr 25, 2020 (154)
126 Korean Genome Project NC_000001.11 - 1220751 Apr 25, 2020 (154)
127 Northern Sweden NC_000001.10 - 1156131 Jul 12, 2019 (153)
128 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000001.10 - 1156131 Apr 25, 2021 (155)
129 Qatari NC_000001.10 - 1156131 Apr 25, 2020 (154)
130 SGDP_PRJ NC_000001.10 - 1156131 Apr 25, 2020 (154)
131 Siberian NC_000001.10 - 1156131 Apr 25, 2020 (154)
132 8.3KJPN NC_000001.10 - 1156131 Apr 25, 2021 (155)
133 TopMed NC_000001.11 - 1220751 Apr 25, 2021 (155)
134 UK 10K study - Twins NC_000001.10 - 1156131 Oct 11, 2018 (152)
135 A Vietnamese Genetic Variation Database NC_000001.10 - 1156131 Jul 12, 2019 (153)
136 ALFA NC_000001.11 - 1220751 Apr 25, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs56560655 May 27, 2008 (130)
rs61630319 May 27, 2008 (130)
rs111183787 Aug 21, 2014 (142)
rs386576339 Aug 21, 2014 (142)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss80468511, ss84779479, ss3638887884, ss3639440650 NC_000001.8:1196053:T:C NC_000001.11:1220750:T:C (self)
27, ss66416875, ss76179473, ss107938631, ss109942197, ss118440683, ss160595467, ss162984308, ss165983274, ss172726434, ss197890188, ss244292661, ss252866581, ss275682742, ss283988123, ss290494470, ss480707158, ss825483066, ss1584132989, ss1712305591, ss2634995318, ss3642746838, ss3847322135 NC_000001.9:1145993:T:C NC_000001.11:1220750:T:C (self)
19805, 7017, 5488, 4400998, 1359657, 17086, 2995, 27380, 4537, 46, 7153, 23862, 3721, 41413, 7017, 1557, ss218192453, ss230396779, ss238116276, ss480722803, ss481596285, ss485148380, ss537144579, ss553714939, ss647519207, ss779040529, ss783020463, ss783980410, ss832277973, ss832932506, ss834503358, ss974773052, ss1067614247, ss1289354574, ss1425686085, ss1573852423, ss1599384523, ss1642378556, ss1685227246, ss1751865161, ss1793718955, ss1917965223, ss1966667864, ss2019500419, ss2147487367, ss2321534200, ss2624265839, ss2632465871, ss2697378144, ss2710663593, ss2731002318, ss2746175118, ss2750683794, ss2986156164, ss3343274911, ss3626007303, ss3630505868, ss3632878078, ss3633571510, ss3634302153, ss3635265713, ss3635978766, ss3637016053, ss3637732560, ss3640009519, ss3646219049, ss3654267240, ss3726719672, ss3744603084, ss3745725558, ss3772104839, ss3825983112, ss3848006882, ss3892849986, ss3983910815, ss3984774119, ss3986091433, ss4016889165, ss5142072106 NC_000001.10:1156130:T:C NC_000001.11:1220750:T:C (self)
169330, 305, 16636, 91602, 158049, 12155251687, ss2159394894, ss3023514531, ss3066497727, ss3686000128, ss3798748256, ss3943638635, ss4436551714, ss5237158429 NC_000001.11:1220750:T:C NC_000001.11:1220750:T:C (self)
ss4079447, ss6879584, ss66583840, ss67281235, ss67683353, ss68756327, ss70759754, ss71333422, ss74946315, ss79152548, ss84115544, ss105112261, ss122135920, ss154243981, ss159420858, ss171465505, ss173523732 NT_004350.19:634762:T:C NC_000001.11:1220750:T:C (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs2887286
PMID Title Author Year Journal
20964851 CCRaVAT and QuTie-enabling analysis of rare variants in large-scale case control and quantitative trait association studies. Lawrence R et al. 2010 BMC bioinformatics
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post596+ae089ad