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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs4750204

Current Build 155

Released April 9, 2021

Organism
Homo sapiens
Position
chr10:6269395 (GRCh38.p13) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
T>C / T>G
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.005678 (1503/264690, TOPMED)
T=0.005534 (776/140222, GnomAD)
T=0.00329 (61/18520, ALFA) (+ 14 more)
T=0.0038 (19/5008, 1000G)
T=0.0002 (1/4480, Estonian)
T=0.0000 (0/3854, ALSPAC)
T=0.0000 (0/3708, TWINSUK)
T=0.0003 (1/2930, KOREAN)
T=0.0000 (0/1832, Korea1K)
T=0.001 (1/998, GoNL)
T=0.000 (0/600, NorthernSweden)
T=0.002 (1/558, SGDP_PRJ)
T=0.012 (4/328, HapMap)
T=0.000 (0/216, Qatari)
T=0.000 (0/212, Vietnamese)
T=0.00 (0/56, Siberian)
T=0.00 (0/40, GENOME_DK)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
None
Publications
0 citations
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p13 chr 10 NC_000010.11:g.6269395T>C
GRCh38.p13 chr 10 NC_000010.11:g.6269395T>G
GRCh37.p13 chr 10 NC_000010.10:g.6311358T>C
GRCh37.p13 chr 10 NC_000010.10:g.6311358T>G
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20201027095038
Population Group Sample Size Ref Allele Alt Allele
Total Global 18520 T=0.00329 G=0.99671
European Sub 14152 T=0.00007 G=0.99993
African Sub 2898 T=0.0204 G=0.9796
African Others Sub 114 T=0.035 G=0.965
African American Sub 2784 T=0.0198 G=0.9802
Asian Sub 112 T=0.000 G=1.000
East Asian Sub 86 T=0.00 G=1.00
Other Asian Sub 26 T=0.00 G=1.00
Latin American 1 Sub 146 T=0.000 G=1.000
Latin American 2 Sub 610 T=0.002 G=0.998
South Asian Sub 98 T=0.00 G=1.00
Other Sub 504 T=0.000 G=1.000


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 T=0.005678 G=0.994322
gnomAD - Genomes Global Study-wide 140222 T=0.005534 G=0.994466
gnomAD - Genomes European Sub 75956 T=0.00004 G=0.99996
gnomAD - Genomes African Sub 42000 T=0.01774 G=0.98226
gnomAD - Genomes American Sub 13654 T=0.00161 G=0.99839
gnomAD - Genomes Ashkenazi Jewish Sub 3324 T=0.0000 G=1.0000
gnomAD - Genomes East Asian Sub 3134 T=0.0000 G=1.0000
gnomAD - Genomes Other Sub 2154 T=0.0028 G=0.9972
1000Genomes Global Study-wide 5008 T=0.0038 G=0.9962
1000Genomes African Sub 1322 T=0.0129 G=0.9871
1000Genomes East Asian Sub 1008 T=0.0000 G=1.0000
1000Genomes Europe Sub 1006 T=0.0000 G=1.0000
1000Genomes South Asian Sub 978 T=0.000 G=1.000
1000Genomes American Sub 694 T=0.003 G=0.997
Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.0002 G=0.9998
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.0000 G=1.0000
UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.0000 G=1.0000
KOREAN population from KRGDB KOREAN Study-wide 2930 T=0.0003 G=0.9997
Korean Genome Project KOREAN Study-wide 1832 T=0.0000 G=1.0000
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 T=0.001 G=0.999
Northern Sweden ACPOP Study-wide 600 T=0.000 G=1.000
SGDP_PRJ Global Study-wide 558 T=0.002 G=0.998
HapMap Global Study-wide 328 T=0.012 G=0.988
HapMap African Sub 120 T=0.033 G=0.967
HapMap American Sub 120 T=0.000 G=1.000
HapMap Asian Sub 88 T=0.00 G=1.00
Qatari Global Study-wide 216 T=0.000 G=1.000
A Vietnamese Genetic Variation Database Global Study-wide 212 T=0.000 G=1.000
Siberian Global Study-wide 56 T=0.00 G=1.00
The Danish reference pan genome Danish Study-wide 40 T=0.00 G=1.00
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement T= C G
GRCh38.p13 chr 10 NC_000010.11:g.6269395= NC_000010.11:g.6269395T>C NC_000010.11:g.6269395T>G
GRCh37.p13 chr 10 NC_000010.10:g.6311358= NC_000010.10:g.6311358T>C NC_000010.10:g.6311358T>G
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

67 SubSNP, 19 Frequency submissions
No Submitter Submission ID Date (Build)
1 WI_SSAHASNP ss6550163 Feb 20, 2003 (111)
2 SC_SNP ss15791615 Feb 27, 2004 (120)
3 CSHL-HAPMAP ss16463192 Feb 27, 2004 (120)
4 SSAHASNP ss20619773 Apr 05, 2004 (121)
5 HGSV ss78756505 Dec 06, 2007 (129)
6 HGSV ss82589892 Dec 14, 2007 (130)
7 BCMHGSC_JDW ss88080931 Mar 23, 2008 (129)
8 HUMANGENOME_JCVI ss97532699 Feb 04, 2009 (130)
9 BGI ss106653290 Feb 04, 2009 (130)
10 1000GENOMES ss109197445 Jan 23, 2009 (130)
11 ILLUMINA-UK ss119003912 Feb 15, 2009 (130)
12 ENSEMBL ss131661838 Dec 01, 2009 (131)
13 ENSEMBL ss137961546 Dec 01, 2009 (131)
14 GMI ss154522758 Dec 01, 2009 (131)
15 COMPLETE_GENOMICS ss167743207 Jul 04, 2010 (132)
16 COMPLETE_GENOMICS ss168978840 Jul 04, 2010 (132)
17 BUSHMAN ss201097495 Jul 04, 2010 (132)
18 BCM-HGSC-SUB ss207340587 Jul 04, 2010 (132)
19 1000GENOMES ss210889948 Jul 14, 2010 (132)
20 1000GENOMES ss224544543 Jul 14, 2010 (132)
21 1000GENOMES ss235038076 Jul 15, 2010 (132)
22 1000GENOMES ss241773891 Jul 15, 2010 (132)
23 BL ss254025826 May 09, 2011 (134)
24 GMI ss280464759 May 04, 2012 (137)
25 GMI ss286122484 Apr 25, 2013 (138)
26 PJP ss290900163 May 09, 2011 (134)
27 TISHKOFF ss561745404 Apr 25, 2013 (138)
28 SSMP ss656251635 Apr 25, 2013 (138)
29 EVA-GONL ss987157310 Aug 21, 2014 (142)
30 JMKIDD_LAB ss1076731708 Aug 21, 2014 (142)
31 1000GENOMES ss1336130109 Aug 21, 2014 (142)
32 DDI ss1426208841 Apr 01, 2015 (144)
33 EVA_GENOME_DK ss1574889250 Apr 01, 2015 (144)
34 EVA_UK10K_ALSPAC ss1623911766 Apr 01, 2015 (144)
35 EVA_UK10K_TWINSUK ss1666905799 Apr 01, 2015 (144)
36 HAMMER_LAB ss1806238302 Sep 08, 2015 (146)
37 WEILL_CORNELL_DGM ss1930478240 Feb 12, 2016 (147)
38 GENOMED ss1967049548 Jul 19, 2016 (147)
39 JJLAB ss2025962249 Sep 14, 2016 (149)
40 USC_VALOUEV ss2154204293 Dec 20, 2016 (150)
41 HUMAN_LONGEVITY ss2172358469 Dec 20, 2016 (150)
42 TOPMED ss2335067570 Dec 20, 2016 (150)
43 SYSTEMSBIOZJU ss2627450033 Nov 08, 2017 (151)
44 GRF ss2698428200 Nov 08, 2017 (151)
45 GNOMAD ss2885105193 Nov 08, 2017 (151)
46 SWEGEN ss3005875627 Nov 08, 2017 (151)
47 BIOINF_KMB_FNS_UNIBA ss3026764643 Nov 08, 2017 (151)
48 TOPMED ss3110664048 Nov 08, 2017 (151)
49 CSHL ss3348941947 Nov 08, 2017 (151)
50 URBANLAB ss3649280458 Oct 12, 2018 (152)
51 EGCUT_WGS ss3673402735 Jul 13, 2019 (153)
52 EVA_DECODE ss3689206559 Jul 13, 2019 (153)
53 ACPOP ss3737026927 Jul 13, 2019 (153)
54 EVA ss3747699655 Jul 13, 2019 (153)
55 PACBIO ss3786570201 Jul 13, 2019 (153)
56 PACBIO ss3791764092 Jul 13, 2019 (153)
57 PACBIO ss3796645872 Jul 13, 2019 (153)
58 KHV_HUMAN_GENOMES ss3813062631 Jul 13, 2019 (153)
59 EVA ss3831947028 Apr 26, 2020 (154)
60 EVA ss3839504351 Apr 26, 2020 (154)
61 EVA ss3844970333 Apr 26, 2020 (154)
62 SGDP_PRJ ss3873453492 Apr 26, 2020 (154)
63 KRGDB ss3921388956 Apr 26, 2020 (154)
64 KOGIC ss3967131361 Apr 26, 2020 (154)
65 TOPMED ss4841242916 Apr 26, 2021 (155)
66 TOMMO_GENOMICS ss5196096837 Apr 26, 2021 (155)
67 TOMMO_GENOMICS ss5196096838 Apr 26, 2021 (155)
68 1000Genomes NC_000010.10 - 6311358 Oct 12, 2018 (152)
69 The Avon Longitudinal Study of Parents and Children NC_000010.10 - 6311358 Oct 12, 2018 (152)
70 Genetic variation in the Estonian population NC_000010.10 - 6311358 Oct 12, 2018 (152)
71 The Danish reference pan genome NC_000010.10 - 6311358 Apr 26, 2020 (154)
72 gnomAD - Genomes NC_000010.11 - 6269395 Apr 26, 2021 (155)
73 Genome of the Netherlands Release 5 NC_000010.10 - 6311358 Apr 26, 2020 (154)
74 HapMap NC_000010.11 - 6269395 Apr 26, 2020 (154)
75 KOREAN population from KRGDB NC_000010.10 - 6311358 Apr 26, 2020 (154)
76 Korean Genome Project NC_000010.11 - 6269395 Apr 26, 2020 (154)
77 Northern Sweden NC_000010.10 - 6311358 Jul 13, 2019 (153)
78 Qatari NC_000010.10 - 6311358 Apr 26, 2020 (154)
79 SGDP_PRJ NC_000010.10 - 6311358 Apr 26, 2020 (154)
80 Siberian NC_000010.10 - 6311358 Apr 26, 2020 (154)
81 8.3KJPN

Submission ignored due to conflicting rows:
Row 54066144 (NC_000010.10:6311357:T:G 16759/16760)
Row 54066145 (NC_000010.10:6311357:T:C 1/16760)

- Apr 26, 2021 (155)
82 8.3KJPN

Submission ignored due to conflicting rows:
Row 54066144 (NC_000010.10:6311357:T:G 16759/16760)
Row 54066145 (NC_000010.10:6311357:T:C 1/16760)

- Apr 26, 2021 (155)
83 TopMed NC_000010.11 - 6269395 Apr 26, 2021 (155)
84 UK 10K study - Twins NC_000010.10 - 6311358 Oct 12, 2018 (152)
85 A Vietnamese Genetic Variation Database NC_000010.10 - 6311358 Jul 13, 2019 (153)
86 ALFA NC_000010.11 - 6269395 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs57286298 May 23, 2008 (130)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss5196096838 NC_000010.10:6311357:T:C NC_000010.11:6269394:T:C
ss78756505, ss82589892 NC_000010.8:6351363:T:G NC_000010.11:6269394:T:G (self)
ss88080931, ss109197445, ss119003912, ss167743207, ss168978840, ss201097495, ss207340587, ss210889948, ss254025826, ss280464759, ss286122484, ss290900163 NC_000010.9:6351363:T:G NC_000010.11:6269394:T:G (self)
48471422, 26932167, 19140983, 2014454, 12012194, 28566350, 10311792, 12520170, 25470472, 6720647, 26932167, 5978579, ss224544543, ss235038076, ss241773891, ss561745404, ss656251635, ss987157310, ss1076731708, ss1336130109, ss1426208841, ss1574889250, ss1623911766, ss1666905799, ss1806238302, ss1930478240, ss1967049548, ss2025962249, ss2154204293, ss2335067570, ss2627450033, ss2698428200, ss2885105193, ss3005875627, ss3348941947, ss3673402735, ss3737026927, ss3747699655, ss3786570201, ss3791764092, ss3796645872, ss3831947028, ss3839504351, ss3873453492, ss3921388956, ss5196096837 NC_000010.10:6311357:T:G NC_000010.11:6269394:T:G (self)
342415842, 330066, 23509362, 35683755, 56788571, 5408862843, ss2172358469, ss3026764643, ss3110664048, ss3649280458, ss3689206559, ss3813062631, ss3844970333, ss3967131361, ss4841242916 NC_000010.11:6269394:T:G NC_000010.11:6269394:T:G (self)
ss6550163, ss97532699, ss106653290, ss131661838, ss137961546, ss154522758 NT_008705.16:6251357:T:G NC_000010.11:6269394:T:G (self)
ss15791615, ss16463192, ss20619773 NT_077569.2:674253:T:G NC_000010.11:6269394:T:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs4750204

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post596+ae089ad