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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs555001

Current Build 155

Released April 9, 2021

Organism
Homo sapiens
Position
chr15:43253530 (GRCh38.p13) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.444282 (117597/264690, TOPMED)
A=0.361547 (90676/250800, GnomAD_exome)
A=0.343657 (52653/153214, ALFA) (+ 19 more)
A=0.422195 (59158/140120, GnomAD)
A=0.369507 (44768/121156, ExAC)
A=0.39863 (6681/16760, 8.3KJPN)
A=0.43701 (5682/13002, GO-ESP)
A=0.4768 (2388/5008, 1000G)
A=0.2609 (1169/4480, Estonian)
A=0.3210 (1237/3854, ALSPAC)
A=0.3223 (1195/3708, TWINSUK)
A=0.4567 (1338/2930, KOREAN)
G=0.4651 (879/1890, HapMap)
A=0.325 (324/998, GoNL)
A=0.355 (218/614, Vietnamese)
A=0.382 (229/600, NorthernSweden)
A=0.404 (216/534, MGP)
G=0.326 (118/362, SGDP_PRJ)
A=0.178 (54/304, FINRISK)
A=0.394 (85/216, Qatari)
A=0.28 (11/40, GENOME_DK)
G=0.43 (12/28, Siberian)
Clinical Significance
Reported in ClinVar
Gene : Consequence
TGM5 : Synonymous Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p13 chr 15 NC_000015.10:g.43253530G>A
GRCh37.p13 chr 15 NC_000015.9:g.43545728G>A
TGM5 RefSeqGene NG_016124.1:g.18328C>T
Gene: TGM5, transglutaminase 5 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
TGM5 transcript variant 1 NM_201631.4:c.660C>T Y [TAC] > Y [TAT] Coding Sequence Variant
protein-glutamine gamma-glutamyltransferase 5 isoform 1 NP_963925.2:p.Tyr220= Y (Tyr) > Y (Tyr) Synonymous Variant
TGM5 transcript variant 2 NM_004245.4:c.414C>T Y [TAC] > Y [TAT] Coding Sequence Variant
protein-glutamine gamma-glutamyltransferase 5 isoform 2 NP_004236.1:p.Tyr138= Y (Tyr) > Y (Tyr) Synonymous Variant
TGM5 transcript variant X1 XM_011522230.2:c. N/A Genic Upstream Transcript Variant
TGM5 transcript variant X2 XM_017022729.1:c. N/A Genic Upstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: A (allele ID: 332002 )
ClinVar Accession Disease Names Clinical Significance
RCV000355393.2 Peeling skin syndrome 2 Benign

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20201027095038
Population Group Sample Size Ref Allele Alt Allele
Total Global 153214 G=0.656343 A=0.343657
European Sub 127080 G=0.673489 A=0.326511
African Sub 5988 G=0.3375 A=0.6625
African Others Sub 216 G=0.269 A=0.731
African American Sub 5772 G=0.3401 A=0.6599
Asian Sub 684 G=0.594 A=0.406
East Asian Sub 522 G=0.580 A=0.420
Other Asian Sub 162 G=0.636 A=0.364
Latin American 1 Sub 1068 G=0.5581 A=0.4419
Latin American 2 Sub 6314 G=0.6788 A=0.3212
South Asian Sub 184 G=0.527 A=0.473
Other Sub 11896 G=0.63618 A=0.36382


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 G=0.555718 A=0.444282
gnomAD - Exomes Global Study-wide 250800 G=0.638453 A=0.361547
gnomAD - Exomes European Sub 134788 G=0.693749 A=0.306251
gnomAD - Exomes Asian Sub 48990 G=0.56754 A=0.43246
gnomAD - Exomes American Sub 34556 G=0.68205 A=0.31795
gnomAD - Exomes African Sub 16254 G=0.32540 A=0.67460
gnomAD - Exomes Ashkenazi Jewish Sub 10078 G=0.58742 A=0.41258
gnomAD - Exomes Other Sub 6134 G=0.6575 A=0.3425
gnomAD - Genomes Global Study-wide 140120 G=0.577805 A=0.422195
gnomAD - Genomes European Sub 75878 G=0.69937 A=0.30063
gnomAD - Genomes African Sub 42002 G=0.33122 A=0.66878
gnomAD - Genomes American Sub 13642 G=0.64646 A=0.35354
gnomAD - Genomes Ashkenazi Jewish Sub 3324 G=0.5890 A=0.4110
gnomAD - Genomes East Asian Sub 3122 G=0.6041 A=0.3959
gnomAD - Genomes Other Sub 2152 G=0.6134 A=0.3866
ExAC Global Study-wide 121156 G=0.630493 A=0.369507
ExAC Europe Sub 73204 G=0.68570 A=0.31430
ExAC Asian Sub 25108 G=0.56580 A=0.43420
ExAC American Sub 11536 G=0.68828 A=0.31172
ExAC African Sub 10402 G=0.33090 A=0.66910
ExAC Other Sub 906 G=0.667 A=0.333
8.3KJPN JAPANESE Study-wide 16760 G=0.60137 A=0.39863
GO Exome Sequencing Project Global Study-wide 13002 G=0.56299 A=0.43701
GO Exome Sequencing Project European American Sub 8598 G=0.6746 A=0.3254
GO Exome Sequencing Project African American Sub 4404 G=0.3451 A=0.6549
1000Genomes Global Study-wide 5008 G=0.5232 A=0.4768
1000Genomes African Sub 1322 G=0.2421 A=0.7579
1000Genomes East Asian Sub 1008 G=0.5873 A=0.4127
1000Genomes Europe Sub 1006 G=0.6640 A=0.3360
1000Genomes South Asian Sub 978 G=0.583 A=0.417
1000Genomes American Sub 694 G=0.677 A=0.323
Genetic variation in the Estonian population Estonian Study-wide 4480 G=0.7391 A=0.2609
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 G=0.6790 A=0.3210
UK 10K study - Twins TWIN COHORT Study-wide 3708 G=0.6777 A=0.3223
KOREAN population from KRGDB KOREAN Study-wide 2930 G=0.5433 A=0.4567
HapMap Global Study-wide 1890 G=0.4651 A=0.5349
HapMap American Sub 770 G=0.579 A=0.421
HapMap African Sub 690 G=0.257 A=0.743
HapMap Asian Sub 254 G=0.571 A=0.429
HapMap Europe Sub 176 G=0.631 A=0.369
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 G=0.675 A=0.325
A Vietnamese Genetic Variation Database Global Study-wide 614 G=0.645 A=0.355
Northern Sweden ACPOP Study-wide 600 G=0.618 A=0.382
Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 G=0.596 A=0.404
SGDP_PRJ Global Study-wide 362 G=0.326 A=0.674
FINRISK Finnish from FINRISK project Study-wide 304 G=0.822 A=0.178
Qatari Global Study-wide 216 G=0.606 A=0.394
The Danish reference pan genome Danish Study-wide 40 G=0.72 A=0.28
Siberian Global Study-wide 28 G=0.43 A=0.57
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= A
GRCh38.p13 chr 15 NC_000015.10:g.43253530= NC_000015.10:g.43253530G>A
GRCh37.p13 chr 15 NC_000015.9:g.43545728= NC_000015.9:g.43545728G>A
TGM5 RefSeqGene NG_016124.1:g.18328= NG_016124.1:g.18328C>T
TGM5 transcript variant 1 NM_201631.4:c.660= NM_201631.4:c.660C>T
TGM5 transcript variant 1 NM_201631.3:c.660= NM_201631.3:c.660C>T
TGM5 transcript variant 2 NM_004245.4:c.414= NM_004245.4:c.414C>T
TGM5 transcript variant 2 NM_004245.3:c.414= NM_004245.3:c.414C>T
protein-glutamine gamma-glutamyltransferase 5 isoform 1 NP_963925.2:p.Tyr220= NP_963925.2:p.Tyr220=
protein-glutamine gamma-glutamyltransferase 5 isoform 2 NP_004236.1:p.Tyr138= NP_004236.1:p.Tyr138=
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

133 SubSNP, 22 Frequency, 1 ClinVar submissions
No Submitter Submission ID Date (Build)
1 SC_JCM ss726006 Aug 11, 2000 (83)
2 KWOK ss1116997 Oct 04, 2000 (86)
3 KWOK ss1699789 Oct 18, 2000 (87)
4 YUSUKE ss3197484 Aug 15, 2001 (98)
5 WI_SSAHASNP ss12328933 Jul 11, 2003 (116)
6 PERLEGEN ss24491020 Sep 20, 2004 (123)
7 ABI ss43783790 Mar 13, 2006 (126)
8 APPLERA_GI ss48404594 Mar 13, 2006 (126)
9 ILLUMINA ss65743270 Oct 14, 2006 (127)
10 ILLUMINA ss74855136 Dec 07, 2007 (129)
11 HGSV ss78459309 Dec 07, 2007 (129)
12 BCMHGSC_JDW ss90138294 Mar 24, 2008 (129)
13 HUMANGENOME_JCVI ss96807123 Feb 05, 2009 (130)
14 1000GENOMES ss108771943 Jan 23, 2009 (130)
15 1000GENOMES ss114092379 Jan 25, 2009 (130)
16 ILLUMINA-UK ss118205339 Feb 14, 2009 (130)
17 KRIBB_YJKIM ss119357987 Dec 01, 2009 (131)
18 ENSEMBL ss134260975 Dec 01, 2009 (131)
19 ENSEMBL ss144118447 Dec 01, 2009 (131)
20 SEATTLESEQ ss159730538 Dec 01, 2009 (131)
21 ILLUMINA ss160742623 Dec 01, 2009 (131)
22 COMPLETE_GENOMICS ss167909541 Jul 04, 2010 (132)
23 COMPLETE_GENOMICS ss169279857 Jul 04, 2010 (132)
24 COMPLETE_GENOMICS ss171017721 Jul 04, 2010 (132)
25 ILLUMINA ss173920738 Jul 04, 2010 (132)
26 BUSHMAN ss200773596 Jul 04, 2010 (132)
27 BCM-HGSC-SUB ss207349533 Jul 04, 2010 (132)
28 1000GENOMES ss217324895 Jul 14, 2010 (132)
29 1000GENOMES ss217403257 Jul 14, 2010 (132)
30 1000GENOMES ss217404948 Jul 14, 2010 (132)
31 1000GENOMES ss217412214 Jul 14, 2010 (132)
32 1000GENOMES ss217423482 Jul 14, 2010 (132)
33 1000GENOMES ss217427661 Jul 14, 2010 (132)
34 1000GENOMES ss217429996 Jul 14, 2010 (132)
35 1000GENOMES ss226863867 Jul 14, 2010 (132)
36 1000GENOMES ss236758430 Jul 15, 2010 (132)
37 1000GENOMES ss243148458 Jul 15, 2010 (132)
38 BL ss254938742 May 09, 2011 (134)
39 GMI ss282232130 May 04, 2012 (137)
40 PJP ss291827153 May 09, 2011 (134)
41 NHLBI-ESP ss342401695 May 09, 2011 (134)
42 ILLUMINA ss481146821 May 04, 2012 (137)
43 ILLUMINA ss481169065 May 04, 2012 (137)
44 ILLUMINA ss482157761 Sep 08, 2015 (146)
45 ILLUMINA ss485368552 May 04, 2012 (137)
46 1000GENOMES ss491081581 May 04, 2012 (137)
47 CLINSEQ_SNP ss491699443 May 04, 2012 (137)
48 ILLUMINA ss535971732 Sep 08, 2015 (146)
49 TISHKOFF ss564446128 Apr 25, 2013 (138)
50 SSMP ss660164288 Apr 25, 2013 (138)
51 ILLUMINA ss778929717 Sep 08, 2015 (146)
52 ILLUMINA ss783129905 Sep 08, 2015 (146)
53 ILLUMINA ss784086435 Sep 08, 2015 (146)
54 ILLUMINA ss832388798 Sep 08, 2015 (146)
55 ILLUMINA ss834391241 Sep 08, 2015 (146)
56 JMKIDD_LAB ss974491040 Aug 21, 2014 (142)
57 EVA-GONL ss991727061 Aug 21, 2014 (142)
58 JMKIDD_LAB ss1067551816 Aug 21, 2014 (142)
59 JMKIDD_LAB ss1080079904 Aug 21, 2014 (142)
60 1000GENOMES ss1353227933 Aug 21, 2014 (142)
61 DDI ss1427608237 Apr 01, 2015 (144)
62 EVA_GENOME_DK ss1577582430 Apr 01, 2015 (144)
63 EVA_FINRISK ss1584093613 Apr 01, 2015 (144)
64 EVA_UK10K_ALSPAC ss1632873907 Apr 01, 2015 (144)
65 EVA_UK10K_TWINSUK ss1675867940 Apr 01, 2015 (144)
66 EVA_EXAC ss1691793866 Apr 01, 2015 (144)
67 EVA_DECODE ss1695742170 Apr 01, 2015 (144)
68 EVA_MGP ss1711395466 Apr 01, 2015 (144)
69 EVA_SVP ss1713485514 Apr 01, 2015 (144)
70 ILLUMINA ss1752160241 Sep 08, 2015 (146)
71 HAMMER_LAB ss1808177801 Sep 08, 2015 (146)
72 WEILL_CORNELL_DGM ss1935131795 Feb 12, 2016 (147)
73 ILLUMINA ss1959607903 Feb 12, 2016 (147)
74 GENOMED ss1968093455 Jul 19, 2016 (147)
75 JJLAB ss2028345671 Sep 14, 2016 (149)
76 USC_VALOUEV ss2156744625 Dec 20, 2016 (150)
77 HUMAN_LONGEVITY ss2206304688 Dec 20, 2016 (150)
78 TOPMED ss2370941304 Dec 20, 2016 (150)
79 SYSTEMSBIOZJU ss2628666846 Nov 08, 2017 (151)
80 ILLUMINA ss2633222076 Nov 08, 2017 (151)
81 GRF ss2701211227 Nov 08, 2017 (151)
82 GNOMAD ss2741190983 Nov 08, 2017 (151)
83 GNOMAD ss2749289188 Nov 08, 2017 (151)
84 GNOMAD ss2934212320 Nov 08, 2017 (151)
85 AFFY ss2985672264 Nov 08, 2017 (151)
86 SWEGEN ss3013186687 Nov 08, 2017 (151)
87 ILLUMINA ss3021627534 Nov 08, 2017 (151)
88 EVA_SAMSUNG_MC ss3023069049 Nov 08, 2017 (151)
89 BIOINF_KMB_FNS_UNIBA ss3027996554 Nov 08, 2017 (151)
90 TOPMED ss3226047781 Nov 08, 2017 (151)
91 CSHL ss3351089854 Nov 08, 2017 (151)
92 ILLUMINA ss3627347955 Oct 12, 2018 (152)
93 ILLUMINA ss3631215531 Oct 12, 2018 (152)
94 ILLUMINA ss3633095449 Oct 12, 2018 (152)
95 ILLUMINA ss3633799997 Oct 12, 2018 (152)
96 ILLUMINA ss3634603800 Oct 12, 2018 (152)
97 ILLUMINA ss3635488955 Oct 12, 2018 (152)
98 ILLUMINA ss3636293835 Oct 12, 2018 (152)
99 ILLUMINA ss3637240213 Oct 12, 2018 (152)
100 ILLUMINA ss3638082181 Oct 12, 2018 (152)
101 ILLUMINA ss3640311124 Oct 12, 2018 (152)
102 ILLUMINA ss3641354929 Oct 12, 2018 (152)
103 ILLUMINA ss3643066567 Oct 12, 2018 (152)
104 OMUKHERJEE_ADBS ss3646473523 Oct 12, 2018 (152)
105 URBANLAB ss3650341879 Oct 12, 2018 (152)
106 ILLUMINA ss3652027775 Oct 12, 2018 (152)
107 EGCUT_WGS ss3680332055 Jul 13, 2019 (153)
108 EVA_DECODE ss3697779975 Jul 13, 2019 (153)
109 ACPOP ss3740874470 Jul 13, 2019 (153)
110 ILLUMINA ss3744904347 Jul 13, 2019 (153)
111 EVA ss3753012566 Jul 13, 2019 (153)
112 ILLUMINA ss3772403013 Jul 13, 2019 (153)
113 PACBIO ss3787830690 Jul 13, 2019 (153)
114 PACBIO ss3792845487 Jul 13, 2019 (153)
115 PACBIO ss3797729965 Jul 13, 2019 (153)
116 KHV_HUMAN_GENOMES ss3818331265 Jul 13, 2019 (153)
117 EVA ss3824912557 Apr 27, 2020 (154)
118 EVA ss3825529866 Apr 27, 2020 (154)
119 EVA ss3825544834 Apr 27, 2020 (154)
120 EVA ss3825857852 Apr 27, 2020 (154)
121 EVA ss3834206338 Apr 27, 2020 (154)
122 EVA ss3840701611 Apr 27, 2020 (154)
123 EVA ss3846190287 Apr 27, 2020 (154)
124 SGDP_PRJ ss3882794415 Apr 27, 2020 (154)
125 KRGDB ss3931939965 Apr 27, 2020 (154)
126 FSA-LAB ss3984071882 Apr 26, 2021 (155)
127 EVA ss3986067020 Apr 26, 2021 (155)
128 EVA ss3986645628 Apr 26, 2021 (155)
129 EVA ss4017698769 Apr 26, 2021 (155)
130 TOPMED ss4989256553 Apr 26, 2021 (155)
131 TOMMO_GENOMICS ss5215913486 Apr 26, 2021 (155)
132 EVA ss5236923242 Apr 26, 2021 (155)
133 EVA ss5237229744 Apr 26, 2021 (155)
134 1000Genomes NC_000015.9 - 43545728 Oct 12, 2018 (152)
135 The Avon Longitudinal Study of Parents and Children NC_000015.9 - 43545728 Oct 12, 2018 (152)
136 Genetic variation in the Estonian population NC_000015.9 - 43545728 Oct 12, 2018 (152)
137 ExAC NC_000015.9 - 43545728 Oct 12, 2018 (152)
138 FINRISK NC_000015.9 - 43545728 Apr 27, 2020 (154)
139 The Danish reference pan genome NC_000015.9 - 43545728 Apr 27, 2020 (154)
140 gnomAD - Genomes NC_000015.10 - 43253530 Apr 26, 2021 (155)
141 gnomAD - Exomes NC_000015.9 - 43545728 Jul 13, 2019 (153)
142 GO Exome Sequencing Project NC_000015.9 - 43545728 Oct 12, 2018 (152)
143 Genome of the Netherlands Release 5 NC_000015.9 - 43545728 Apr 27, 2020 (154)
144 HapMap NC_000015.10 - 43253530 Apr 27, 2020 (154)
145 KOREAN population from KRGDB NC_000015.9 - 43545728 Apr 27, 2020 (154)
146 Medical Genome Project healthy controls from Spanish population NC_000015.9 - 43545728 Apr 27, 2020 (154)
147 Northern Sweden NC_000015.9 - 43545728 Jul 13, 2019 (153)
148 Qatari NC_000015.9 - 43545728 Apr 27, 2020 (154)
149 SGDP_PRJ NC_000015.9 - 43545728 Apr 27, 2020 (154)
150 Siberian NC_000015.9 - 43545728 Apr 27, 2020 (154)
151 8.3KJPN NC_000015.9 - 43545728 Apr 26, 2021 (155)
152 TopMed NC_000015.10 - 43253530 Apr 26, 2021 (155)
153 UK 10K study - Twins NC_000015.9 - 43545728 Oct 12, 2018 (152)
154 A Vietnamese Genetic Variation Database NC_000015.9 - 43545728 Jul 13, 2019 (153)
155 ALFA NC_000015.10 - 43253530 Apr 26, 2021 (155)
156 ClinVar RCV000355393.2 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs17678926 Oct 08, 2004 (123)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss78459309, ss90138294, ss108771943, ss114092379, ss118205339, ss167909541, ss169279857, ss171017721, ss200773596, ss207349533, ss217324895, ss217403257, ss217404948, ss217412214, ss217423482, ss217427661, ss217429996, ss254938742, ss282232130, ss291827153, ss481146821, ss491699443, ss1695742170, ss1713485514, ss3643066567 NC_000015.8:41333019:G:A NC_000015.10:43253529:G:A (self)
66291218, 36800162, 26070303, 2164734, 90074, 3833756, 10454709, 1369830, 16437081, 39117359, 511226, 14159335, 17173725, 34811395, 9260979, 73882793, 36800162, 8187332, ss226863867, ss236758430, ss243148458, ss342401695, ss481169065, ss482157761, ss485368552, ss491081581, ss535971732, ss564446128, ss660164288, ss778929717, ss783129905, ss784086435, ss832388798, ss834391241, ss974491040, ss991727061, ss1067551816, ss1080079904, ss1353227933, ss1427608237, ss1577582430, ss1584093613, ss1632873907, ss1675867940, ss1691793866, ss1711395466, ss1752160241, ss1808177801, ss1935131795, ss1959607903, ss1968093455, ss2028345671, ss2156744625, ss2370941304, ss2628666846, ss2633222076, ss2701211227, ss2741190983, ss2749289188, ss2934212320, ss2985672264, ss3013186687, ss3021627534, ss3023069049, ss3351089854, ss3627347955, ss3631215531, ss3633095449, ss3633799997, ss3634603800, ss3635488955, ss3636293835, ss3637240213, ss3638082181, ss3640311124, ss3641354929, ss3646473523, ss3652027775, ss3680332055, ss3740874470, ss3744904347, ss3753012566, ss3772403013, ss3787830690, ss3792845487, ss3797729965, ss3824912557, ss3825529866, ss3825544834, ss3825857852, ss3834206338, ss3840701611, ss3882794415, ss3931939965, ss3984071882, ss3986067020, ss3986645628, ss4017698769, ss5215913486 NC_000015.9:43545727:G:A NC_000015.10:43253529:G:A (self)
RCV000355393.2, 467304945, 1251932, 128135817, 204802213, 5607402920, ss2206304688, ss3027996554, ss3226047781, ss3650341879, ss3697779975, ss3818331265, ss3846190287, ss4989256553, ss5236923242, ss5237229744 NC_000015.10:43253529:G:A NC_000015.10:43253529:G:A (self)
ss12328933 NT_010194.15:14335338:G:A NC_000015.10:43253529:G:A (self)
ss726006, ss1116997, ss1699789, ss3197484, ss24491020, ss43783790, ss48404594, ss65743270, ss74855136, ss96807123, ss119357987, ss134260975, ss144118447, ss159730538, ss160742623, ss173920738 NT_010194.17:14336284:G:A NC_000015.10:43253529:G:A (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs555001

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post596+ae089ad