Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5786797

Current Build 154

Released April 21, 2020

Organism
Homo sapiens
Position
chr10:87966903-87966931 (GRCh38.p12) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
del(T)16 / del(T)15 / del(T)14 / d…

del(T)16 / del(T)15 / del(T)14 / del(T)13 / del(T)12 / del(T)11 / del(T)10 / del(T)9 / del(T)8 / del(T)7 / del(T)6 / del(T)5 / del(T)4 / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)4

Variation Type
Indel Insertion and Deletion
Frequency
TTTTTTTTTTTTT=0.0 (0/5120, ALFA Project)
Clinical Significance
Reported in ClinVar
Gene : Consequence
PTEN : 3 Prime UTR Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p12 chr 10 NC_000010.11:g.87966916_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966917_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966918_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966919_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966920_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966921_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966922_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966923_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966924_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966925_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966926_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966927_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966928_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966929_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966930_87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966931del
GRCh38.p12 chr 10 NC_000010.11:g.87966931dup
GRCh38.p12 chr 10 NC_000010.11:g.87966930_87966931dup
GRCh38.p12 chr 10 NC_000010.11:g.87966929_87966931dup
GRCh38.p12 chr 10 NC_000010.11:g.87966928_87966931dup
GRCh37.p13 chr 10 NC_000010.10:g.89726673_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726674_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726675_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726676_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726677_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726678_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726679_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726680_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726681_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726682_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726683_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726684_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726685_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726686_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726687_89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726688del
GRCh37.p13 chr 10 NC_000010.10:g.89726688dup
GRCh37.p13 chr 10 NC_000010.10:g.89726687_89726688dup
GRCh37.p13 chr 10 NC_000010.10:g.89726686_89726688dup
GRCh37.p13 chr 10 NC_000010.10:g.89726685_89726688dup
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108478_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108479_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108480_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108481_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108482_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108483_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108484_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108485_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108486_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108487_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108488_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108489_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108490_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108491_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108492_108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108493del
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108493dup
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108492_108493dup
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108491_108493dup
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108490_108493dup
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182705_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182706_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182707_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182708_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182709_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182710_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182711_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182712_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182713_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182714_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182715_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182716_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182717_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182718_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182719_182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182720del
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182720dup
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182719_182720dup
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182718_182720dup
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182717_182720dup
Gene: PTEN, phosphatase and tensin homolog (plus strand)
Molecule type Change Amino acid[Codon] SO Term
PTEN transcript variant 2 NM_001304718.2:c.*1431_*1…

NM_001304718.2:c.*1431_*1459=

N/A 3 Prime UTR Variant
PTEN transcript variant 1 NM_001304717.5:c.*1431_*1…

NM_001304717.5:c.*1431_*1459=

N/A 3 Prime UTR Variant
PTEN transcript variant 1 NM_000314.8:c.*1431_*1459= N/A 3 Prime UTR Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: delTTT (allele ID: 323732 )
ClinVar Accession Disease Names Clinical Significance
RCV000293361.1 PTEN hamartoma tumor syndrome Uncertain-Significance
Allele: delTT (allele ID: 323118 )
ClinVar Accession Disease Names Clinical Significance
RCV000316623.1 PTEN hamartoma tumor syndrome Uncertain-Significance
Allele: delT (allele ID: 323131 )
ClinVar Accession Disease Names Clinical Significance
RCV000373651.1 PTEN hamartoma tumor syndrome Uncertain-Significance
Allele: dupT (allele ID: 323135 )
ClinVar Accession Disease Names Clinical Significance
RCV000277888.1 PTEN hamartoma tumor syndrome Uncertain-Significance

ALFA Allele Frequency (New)
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20201027095038
Population Group Sample Size Ref Allele Alt Allele
Total Global 5120 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.7213 TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0076, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.1432, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0732, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0113, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0320, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0113, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0000
European Sub 4896 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.7094 TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0078, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.1491, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0766, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0118, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0335, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0118, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0000
African Sub 122 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000
African Others Sub 6 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.0 TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0
African American Sub 116 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.000 TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.000
Asian Sub 14 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00
East Asian Sub 14 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00
Other Asian Sub 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0 TTTTTTTTTTTTT=0, TTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0
Latin American 1 Sub 6 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.0 TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0
Latin American 2 Sub 48 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.00 TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00
South Asian Sub 2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=1.0 TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.0
Other Sub 32 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.88 TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTT=0.03, TTTTTTTTTTTTTTTTTTTTTTTTTTT=0.09, TTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT=0.00


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

None
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement (T)29= del(T)16 del(T)15 del(T)14 del(T)13 del(T)12 del(T)11 del(T)10 del(T)9 del(T)8 del(T)7 del(T)6 del(T)5 del(T)4 delTTT delTT delT dupT dupTT dupTTT dup(T)4
GRCh38.p12 chr 10 NC_000010.11:g.87966903_87966931= NC_000010.11:g.87966916_87966931del NC_000010.11:g.87966917_87966931del NC_000010.11:g.87966918_87966931del NC_000010.11:g.87966919_87966931del NC_000010.11:g.87966920_87966931del NC_000010.11:g.87966921_87966931del NC_000010.11:g.87966922_87966931del NC_000010.11:g.87966923_87966931del NC_000010.11:g.87966924_87966931del NC_000010.11:g.87966925_87966931del NC_000010.11:g.87966926_87966931del NC_000010.11:g.87966927_87966931del NC_000010.11:g.87966928_87966931del NC_000010.11:g.87966929_87966931del NC_000010.11:g.87966930_87966931del NC_000010.11:g.87966931del NC_000010.11:g.87966931dup NC_000010.11:g.87966930_87966931dup NC_000010.11:g.87966929_87966931dup NC_000010.11:g.87966928_87966931dup
GRCh37.p13 chr 10 NC_000010.10:g.89726660_89726688= NC_000010.10:g.89726673_89726688del NC_000010.10:g.89726674_89726688del NC_000010.10:g.89726675_89726688del NC_000010.10:g.89726676_89726688del NC_000010.10:g.89726677_89726688del NC_000010.10:g.89726678_89726688del NC_000010.10:g.89726679_89726688del NC_000010.10:g.89726680_89726688del NC_000010.10:g.89726681_89726688del NC_000010.10:g.89726682_89726688del NC_000010.10:g.89726683_89726688del NC_000010.10:g.89726684_89726688del NC_000010.10:g.89726685_89726688del NC_000010.10:g.89726686_89726688del NC_000010.10:g.89726687_89726688del NC_000010.10:g.89726688del NC_000010.10:g.89726688dup NC_000010.10:g.89726687_89726688dup NC_000010.10:g.89726686_89726688dup NC_000010.10:g.89726685_89726688dup
PTEN RefSeqGene (LRG_311) NG_007466.2:g.108465_108493= NG_007466.2:g.108478_108493del NG_007466.2:g.108479_108493del NG_007466.2:g.108480_108493del NG_007466.2:g.108481_108493del NG_007466.2:g.108482_108493del NG_007466.2:g.108483_108493del NG_007466.2:g.108484_108493del NG_007466.2:g.108485_108493del NG_007466.2:g.108486_108493del NG_007466.2:g.108487_108493del NG_007466.2:g.108488_108493del NG_007466.2:g.108489_108493del NG_007466.2:g.108490_108493del NG_007466.2:g.108491_108493del NG_007466.2:g.108492_108493del NG_007466.2:g.108493del NG_007466.2:g.108493dup NG_007466.2:g.108492_108493dup NG_007466.2:g.108491_108493dup NG_007466.2:g.108490_108493dup
PTEN transcript variant 1 NM_000314.8:c.*1431_*1459= NM_000314.8:c.*1444_*1459del NM_000314.8:c.*1445_*1459del NM_000314.8:c.*1446_*1459del NM_000314.8:c.*1447_*1459del NM_000314.8:c.*1448_*1459del NM_000314.8:c.*1449_*1459del NM_000314.8:c.*1450_*1459del NM_000314.8:c.*1451_*1459del NM_000314.8:c.*1452_*1459del NM_000314.8:c.*1453_*1459del NM_000314.8:c.*1454_*1459del NM_000314.8:c.*1455_*1459del NM_000314.8:c.*1456_*1459del NM_000314.8:c.*1457_*1459del NM_000314.8:c.*1458_*1459del NM_000314.8:c.*1459del NM_000314.8:c.*1459dup NM_000314.8:c.*1458_*1459dup NM_000314.8:c.*1457_*1459dup NM_000314.8:c.*1456_*1459dup
PTEN transcript variant 1 NM_000314.7:c.*1431_*1459= NM_000314.7:c.*1444_*1459del NM_000314.7:c.*1445_*1459del NM_000314.7:c.*1446_*1459del NM_000314.7:c.*1447_*1459del NM_000314.7:c.*1448_*1459del NM_000314.7:c.*1449_*1459del NM_000314.7:c.*1450_*1459del NM_000314.7:c.*1451_*1459del NM_000314.7:c.*1452_*1459del NM_000314.7:c.*1453_*1459del NM_000314.7:c.*1454_*1459del NM_000314.7:c.*1455_*1459del NM_000314.7:c.*1456_*1459del NM_000314.7:c.*1457_*1459del NM_000314.7:c.*1458_*1459del NM_000314.7:c.*1459del NM_000314.7:c.*1459dup NM_000314.7:c.*1458_*1459dup NM_000314.7:c.*1457_*1459dup NM_000314.7:c.*1456_*1459dup
PTEN transcript variant 1 NM_000314.6:c.*1431_*1459= NM_000314.6:c.*1444_*1459del NM_000314.6:c.*1445_*1459del NM_000314.6:c.*1446_*1459del NM_000314.6:c.*1447_*1459del NM_000314.6:c.*1448_*1459del NM_000314.6:c.*1449_*1459del NM_000314.6:c.*1450_*1459del NM_000314.6:c.*1451_*1459del NM_000314.6:c.*1452_*1459del NM_000314.6:c.*1453_*1459del NM_000314.6:c.*1454_*1459del NM_000314.6:c.*1455_*1459del NM_000314.6:c.*1456_*1459del NM_000314.6:c.*1457_*1459del NM_000314.6:c.*1458_*1459del NM_000314.6:c.*1459del NM_000314.6:c.*1459dup NM_000314.6:c.*1458_*1459dup NM_000314.6:c.*1457_*1459dup NM_000314.6:c.*1456_*1459dup
PTEN transcript NM_000314.4:c.*1431_*1459= NM_000314.4:c.*1444_*1459del NM_000314.4:c.*1445_*1459del NM_000314.4:c.*1446_*1459del NM_000314.4:c.*1447_*1459del NM_000314.4:c.*1448_*1459del NM_000314.4:c.*1449_*1459del NM_000314.4:c.*1450_*1459del NM_000314.4:c.*1451_*1459del NM_000314.4:c.*1452_*1459del NM_000314.4:c.*1453_*1459del NM_000314.4:c.*1454_*1459del NM_000314.4:c.*1455_*1459del NM_000314.4:c.*1456_*1459del NM_000314.4:c.*1457_*1459del NM_000314.4:c.*1458_*1459del NM_000314.4:c.*1459del NM_000314.4:c.*1459dup NM_000314.4:c.*1458_*1459dup NM_000314.4:c.*1457_*1459dup NM_000314.4:c.*1456_*1459dup
PTEN transcript variant 1 NM_001304717.5:c.*1431_*1459= NM_001304717.5:c.*1444_*1459del NM_001304717.5:c.*1445_*1459del NM_001304717.5:c.*1446_*1459del NM_001304717.5:c.*1447_*1459del NM_001304717.5:c.*1448_*1459del NM_001304717.5:c.*1449_*1459del NM_001304717.5:c.*1450_*1459del NM_001304717.5:c.*1451_*1459del NM_001304717.5:c.*1452_*1459del NM_001304717.5:c.*1453_*1459del NM_001304717.5:c.*1454_*1459del NM_001304717.5:c.*1455_*1459del NM_001304717.5:c.*1456_*1459del NM_001304717.5:c.*1457_*1459del NM_001304717.5:c.*1458_*1459del NM_001304717.5:c.*1459del NM_001304717.5:c.*1459dup NM_001304717.5:c.*1458_*1459dup NM_001304717.5:c.*1457_*1459dup NM_001304717.5:c.*1456_*1459dup
PTEN transcript variant 1 NM_001304717.4:c.*1431_*1459= NM_001304717.4:c.*1444_*1459del NM_001304717.4:c.*1445_*1459del NM_001304717.4:c.*1446_*1459del NM_001304717.4:c.*1447_*1459del NM_001304717.4:c.*1448_*1459del NM_001304717.4:c.*1449_*1459del NM_001304717.4:c.*1450_*1459del NM_001304717.4:c.*1451_*1459del NM_001304717.4:c.*1452_*1459del NM_001304717.4:c.*1453_*1459del NM_001304717.4:c.*1454_*1459del NM_001304717.4:c.*1455_*1459del NM_001304717.4:c.*1456_*1459del NM_001304717.4:c.*1457_*1459del NM_001304717.4:c.*1458_*1459del NM_001304717.4:c.*1459del NM_001304717.4:c.*1459dup NM_001304717.4:c.*1458_*1459dup NM_001304717.4:c.*1457_*1459dup NM_001304717.4:c.*1456_*1459dup
PTEN transcript variant 1 NM_001304717.3:c.*1431_*1459= NM_001304717.3:c.*1444_*1459del NM_001304717.3:c.*1445_*1459del NM_001304717.3:c.*1446_*1459del NM_001304717.3:c.*1447_*1459del NM_001304717.3:c.*1448_*1459del NM_001304717.3:c.*1449_*1459del NM_001304717.3:c.*1450_*1459del NM_001304717.3:c.*1451_*1459del NM_001304717.3:c.*1452_*1459del NM_001304717.3:c.*1453_*1459del NM_001304717.3:c.*1454_*1459del NM_001304717.3:c.*1455_*1459del NM_001304717.3:c.*1456_*1459del NM_001304717.3:c.*1457_*1459del NM_001304717.3:c.*1458_*1459del NM_001304717.3:c.*1459del NM_001304717.3:c.*1459dup NM_001304717.3:c.*1458_*1459dup NM_001304717.3:c.*1457_*1459dup NM_001304717.3:c.*1456_*1459dup
PTEN transcript variant 1 NM_001304717.2:c.*1431_*1459= NM_001304717.2:c.*1444_*1459del NM_001304717.2:c.*1445_*1459del NM_001304717.2:c.*1446_*1459del NM_001304717.2:c.*1447_*1459del NM_001304717.2:c.*1448_*1459del NM_001304717.2:c.*1449_*1459del NM_001304717.2:c.*1450_*1459del NM_001304717.2:c.*1451_*1459del NM_001304717.2:c.*1452_*1459del NM_001304717.2:c.*1453_*1459del NM_001304717.2:c.*1454_*1459del NM_001304717.2:c.*1455_*1459del NM_001304717.2:c.*1456_*1459del NM_001304717.2:c.*1457_*1459del NM_001304717.2:c.*1458_*1459del NM_001304717.2:c.*1459del NM_001304717.2:c.*1459dup NM_001304717.2:c.*1458_*1459dup NM_001304717.2:c.*1457_*1459dup NM_001304717.2:c.*1456_*1459dup
PTEN transcript variant 2 NM_001304718.2:c.*1431_*1459= NM_001304718.2:c.*1444_*1459del NM_001304718.2:c.*1445_*1459del NM_001304718.2:c.*1446_*1459del NM_001304718.2:c.*1447_*1459del NM_001304718.2:c.*1448_*1459del NM_001304718.2:c.*1449_*1459del NM_001304718.2:c.*1450_*1459del NM_001304718.2:c.*1451_*1459del NM_001304718.2:c.*1452_*1459del NM_001304718.2:c.*1453_*1459del NM_001304718.2:c.*1454_*1459del NM_001304718.2:c.*1455_*1459del NM_001304718.2:c.*1456_*1459del NM_001304718.2:c.*1457_*1459del NM_001304718.2:c.*1458_*1459del NM_001304718.2:c.*1459del NM_001304718.2:c.*1459dup NM_001304718.2:c.*1458_*1459dup NM_001304718.2:c.*1457_*1459dup NM_001304718.2:c.*1456_*1459dup
PTEN transcript variant 2 NM_001304718.1:c.*1431_*1459= NM_001304718.1:c.*1444_*1459del NM_001304718.1:c.*1445_*1459del NM_001304718.1:c.*1446_*1459del NM_001304718.1:c.*1447_*1459del NM_001304718.1:c.*1448_*1459del NM_001304718.1:c.*1449_*1459del NM_001304718.1:c.*1450_*1459del NM_001304718.1:c.*1451_*1459del NM_001304718.1:c.*1452_*1459del NM_001304718.1:c.*1453_*1459del NM_001304718.1:c.*1454_*1459del NM_001304718.1:c.*1455_*1459del NM_001304718.1:c.*1456_*1459del NM_001304718.1:c.*1457_*1459del NM_001304718.1:c.*1458_*1459del NM_001304718.1:c.*1459del NM_001304718.1:c.*1459dup NM_001304718.1:c.*1458_*1459dup NM_001304718.1:c.*1457_*1459dup NM_001304718.1:c.*1456_*1459dup
chr 10 fix patch HG2334_PATCH NW_013171807.1:g.182692_182720= NW_013171807.1:g.182705_182720del NW_013171807.1:g.182706_182720del NW_013171807.1:g.182707_182720del NW_013171807.1:g.182708_182720del NW_013171807.1:g.182709_182720del NW_013171807.1:g.182710_182720del NW_013171807.1:g.182711_182720del NW_013171807.1:g.182712_182720del NW_013171807.1:g.182713_182720del NW_013171807.1:g.182714_182720del NW_013171807.1:g.182715_182720del NW_013171807.1:g.182716_182720del NW_013171807.1:g.182717_182720del NW_013171807.1:g.182718_182720del NW_013171807.1:g.182719_182720del NW_013171807.1:g.182720del NW_013171807.1:g.182720dup NW_013171807.1:g.182719_182720dup NW_013171807.1:g.182718_182720dup NW_013171807.1:g.182717_182720dup
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

31 SubSNP, 6 Frequency, 4 ClinVar submissions
No Submitter Submission ID Date (Build)
1 HUMANGENOME_JCVI ss95548341 Feb 05, 2009 (137)
2 GMI ss289028907 May 04, 2012 (137)
3 PJP ss294668518 May 09, 2011 (138)
4 CLINVAR ss2137080381 Dec 14, 2016 (149)
5 CLINVAR ss2137080382 Dec 14, 2016 (149)
6 CLINVAR ss2137080383 Dec 14, 2016 (149)
7 SWEGEN ss3006889987 Nov 08, 2017 (151)
8 TOPMED ss3126322689 Nov 08, 2017 (151)
9 TOPMED ss3126322690 Nov 08, 2017 (151)
10 TOPMED ss3126322691 Nov 08, 2017 (151)
11 TOPMED ss3126322692 Nov 08, 2017 (151)
12 TOPMED ss3126322694 Nov 08, 2017 (151)
13 TOPMED ss3126322695 Nov 08, 2017 (151)
14 TOPMED ss3126322696 Nov 08, 2017 (151)
15 TOPMED ss3126322697 Nov 08, 2017 (151)
16 TOPMED ss3126322698 Nov 08, 2017 (151)
17 TOPMED ss3126322699 Nov 08, 2017 (151)
18 TOPMED ss3126322700 Nov 08, 2017 (151)
19 TOPMED ss3126322701 Nov 08, 2017 (151)
20 TOPMED ss3126322702 Nov 08, 2017 (151)
21 TOPMED ss3126322703 Nov 08, 2017 (151)
22 TOPMED ss3126322704 Nov 08, 2017 (151)
23 TOPMED ss3126322705 Nov 08, 2017 (151)
24 TOPMED ss3126322706 Nov 08, 2017 (151)
25 TOPMED ss3126322707 Nov 08, 2017 (151)
26 TOPMED ss3126322708 Nov 08, 2017 (151)
27 TOPMED ss3126322709 Nov 08, 2017 (151)
28 PACBIO ss3786744159 Jul 13, 2019 (153)
29 PACBIO ss3791913900 Jul 13, 2019 (153)
30 PACBIO ss3796796007 Jul 13, 2019 (153)
31 EVA ss3832252783 Apr 26, 2020 (154)
32 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 138963001 (NC_000010.10:89726659::T 452/7812)
Row 138963002 (NC_000010.10:89726659::TT 262/7812)
Row 138963003 (NC_000010.10:89726659::TTT 94/7812)...

- Jul 13, 2019 (153)
33 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 138963001 (NC_000010.10:89726659::T 452/7812)
Row 138963002 (NC_000010.10:89726659::TT 262/7812)
Row 138963003 (NC_000010.10:89726659::TTT 94/7812)...

- Jul 13, 2019 (153)
34 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 138963001 (NC_000010.10:89726659::T 452/7812)
Row 138963002 (NC_000010.10:89726659::TT 262/7812)
Row 138963003 (NC_000010.10:89726659::TTT 94/7812)...

- Jul 13, 2019 (153)
35 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 138963001 (NC_000010.10:89726659::T 452/7812)
Row 138963002 (NC_000010.10:89726659::TT 262/7812)
Row 138963003 (NC_000010.10:89726659::TTT 94/7812)...

- Jul 13, 2019 (153)
36 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 138963001 (NC_000010.10:89726659::T 452/7812)
Row 138963002 (NC_000010.10:89726659::TT 262/7812)
Row 138963003 (NC_000010.10:89726659::TTT 94/7812)...

- Jul 13, 2019 (153)
37 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 138963001 (NC_000010.10:89726659::T 452/7812)
Row 138963002 (NC_000010.10:89726659::TT 262/7812)
Row 138963003 (NC_000010.10:89726659::TTT 94/7812)...

- Jul 13, 2019 (153)
38 ClinVar RCV000277888.1 Oct 12, 2018 (152)
39 ClinVar RCV000293361.1 Oct 12, 2018 (152)
40 ClinVar RCV000316623.1 Oct 12, 2018 (152)
41 ClinVar RCV000373651.1 Oct 12, 2018 (152)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs34710753 Oct 14, 2006 (127)
rs67047781 May 11, 2012 (137)
rs67047782 Feb 26, 2009 (130)
rs148791838 Apr 25, 2013 (138)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss3126322709 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTT:

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT

(self)
ss289028907 NC_000010.9:89716639:TTTTTTTTTTTTT…

NC_000010.9:89716639:TTTTTTTTTTTTTTT:

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

(self)
ss3126322708 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTT:

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT

(self)
ss3126322707 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTT:

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT

(self)
ss3126322706 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTT:

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT

(self)
ss3126322705 NC_000010.11:87966902:TTTTTTTTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT

(self)
ss3126322704 NC_000010.11:87966902:TTTTTTTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT

(self)
ss3126322703 NC_000010.11:87966902:TTTTTTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT

(self)
ss3126322702 NC_000010.11:87966902:TTTTTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT

(self)
ss3126322701 NC_000010.11:87966902:TTTTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322700 NC_000010.11:87966902:TTTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322699 NC_000010.11:87966902:TTTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322698 NC_000010.11:87966902:TTTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322697 NC_000010.11:87966902:TTTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3006889987, ss3786744159, ss3832252783 NC_000010.10:89726659:TTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322696 NC_000010.11:87966902:TTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
RCV000293361.1 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

ss2137080383 NC_000010.11:87966928:TTT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss294668518 NC_000010.9:89716666:TT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3791913900, ss3796796007 NC_000010.10:89726659:TT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322695 NC_000010.11:87966902:TT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
RCV000316623.1 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

ss95548341 NT_030059.13:40531150:TT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
NC_000010.10:89726659:T: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322694 NC_000010.11:87966902:T: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
RCV000373651.1 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

ss2137080382 NC_000010.11:87966930:T: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
NC_000010.10:89726659::T NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322689 NC_000010.11:87966902::T NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
RCV000277888.1 NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

ss2137080381 NC_000010.11:87966931::T NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
NC_000010.10:89726659::TT NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322690 NC_000010.11:87966902::TT NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
NC_000010.10:89726659::TTT NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322691 NC_000010.11:87966902::TTT NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
ss3126322692 NC_000010.11:87966902::TTTT NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

(self)
Removed from this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Destination RSIDs
RCV000316623.1 NC_000010.11:87966929:TT: NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT

RCV000277888.1 NC_000010.11:87966930:T:TT NC_000010.11:87966902:TTTTTTTTTTTT…

NC_000010.11:87966902:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs5786797

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post565+e32b82c