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SRX9215692: UCEs of Hemithraupis flavicollis
1 ILLUMINA (Illumina HiSeq 2000) run: 1.6M spots, 467.4M bases, 190.6Mb downloads

Design: Ultraconserved elements (UCEs) extracted via Illumina
Submitted by: Museu de Zoologia da Universidade de Sao Paulo
Study: Comparative phylogeography of the avifauna in the northern Atlantic Forest
show Abstracthide Abstract
The Pernambuco Center of Endemism (PCE) is the northernmost strip of the Atlantic Forest (AF). The biogeographic affinities among avifaunas in the PCE, the southern-central Atlantic Forest (SCAF), and Amazonia (AM) have not been studied comprehensively, and current patterns of genetic diversity in the PCE remain unclear. The interplay between species ecological attributes and historical processes, such as Pleistocene climate fluctuations or the appearance of rivers, may have affected population genetic structures in the PCE. Moreover, the role of past connections between the PCE and AM and the elevational distribution of species in assembling the PCE avifauna remain untested. Here, we investigated the biogeographic history of seven taxa endemic to the PCE within a comparative phylogeographic framework based on 3,618 independent single nucleotide polymorphisms (SNPs) extracted from flanking regions of ultraconserved elements (UCEs) and one mitochondrial gene.
Sample: Hem_gui_MZUSP_99433
SAMN16133933 • SRS7449591 • All experiments • All runs
Library:
Name: Hem_gui_MZUSP_99433
Instrument: Illumina HiSeq 2000
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Reduced Representation
Layout: PAIRED
Runs: 1 run, 1.6M spots, 467.4M bases, 190.6Mb
Run# of Spots# of BasesSizePublished
SRR127432611,558,078467.4M190.6Mb2020-10-05

ID:
12002737

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