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ERX344489: Population Genomics of Pseudomonas aeruginosa 239A
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 7.9M spots, 1.4G bases, 834Mb downloads

Submitted by: MHH
Study: The Pseudomonas aeruginosa pangenome
show Abstracthide Abstract
Pseudomonas aeruginosa bacteria can display highly divergent phenotypes. This is reflected by a high genomic variability, as typically 10 – 20 % of the genome is made up by DNA specific for clonal lineages or even single isolates. Therefore, a large and diverse pangenome is assumed for this species. In order to characterize composition and size of the pangenome, we performed genome sequencing for 20 unrelated P. aeruginosa isolates. These isolates represent the 15 most prominent clonal lineages of the worldwide P. aeruginosa population and 5 lineages which had not been found among clinical samples at the time of selection. Thus genome comparisons of these 20 isolates should allow a comprising view on the pangenome of this bacterial species characterized as an opportunistic pathogen with high metabolic versatility.
Sample: 6
SAMEA2472093 • ERS370990 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina Genome Analyzer IIx
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 7.9M spots, 1.4G bases, 834Mb
Run# of Spots# of BasesSizePublished
ERR3718147,879,9611.4G834Mb2014-05-14

ID:
760378

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