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SRX2628612: Nitrospira sp. UBA5699
1 ILLUMINA (Illumina HiSeq 2500) run: 462,526 spots, 86.4M bases, 52.8Mb downloads

Design: BWA (BWA-MEM) mapping of Nitrospira sp. UBA5699 using version 0.7.12-r1039 and assembled with CLC de novo assembler 4.4.1 with a genome coverage of 18.49
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Nitrospira sp. UBA5699 genome recovered from SRX806414
SAMN06457681 • SRS2038459 • All experiments • All runs
Name: SRX806414.b4.bam
Instrument: Illumina HiSeq 2500
Strategy: WGS
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 462,526 spots, 86.4M bases, 52.8Mb
Run# of Spots# of BasesSizePublished


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