Transcriptome from Endomyzostoma scotia - SRA

SRX1015828: Transcriptome from Endomyzostoma scotia
1 ILLUMINA (Illumina HiSeq 2000) run: 58.5M spots, 11.8G bases, 6.9Gb downloads

Design: Tissue were preserved in at least 10 volumes of RNAlater® soon after the animals were collected; if sent to the laboratory alive, animals were flash-frozen in liquid nitrogen. All samples were stored at -80 ºC until RNA was extracted. Total RNA was extracted using Tri-Reagent® (Ambion), following the manufacturer’s protocol. Subsequent mRNA purification was performed with the Dynabeads® mRNA Purification Kit for mRNA (Invitrogen). Purification from Total RNA preps followed the manufacturer’s instructions. Further details of the RNA extraction and purification protocols can be found in Riesgo, Andrade, et al. (2012) . Quantity and quality (purity and integrity) of mRNA were assessed by two different methods. Quantity of mRNA was measured with the fluorometric quantitation performed by the QubiT® Fluorometer (Invitrogen, California, USA). Also, capillary electrophoresis in an RNA Pico 6000 chip was done using an Agilent Bioanalyzer 2100 System with the “mRNA pico Series II” assay (Agilent Technologies, California, USA). Integrity of mRNA was estimated by the electropherogram profile and lack of rRNA contamination (based on rRNA peaks for 18S and 28S rRNA given by the Bioanalyzer software).

Submitted by: HARVARD UNIVERSITY

Study: Endomyzostoma scotia isolate:Myzostomida Transcriptome or Gene expression

PRJNA282828 • SRP057872 • All experiments • All runs

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Transcriptome for studying phylogenetic relationships among annelids

Sample: Transcriptome from Endomyzostoma scotia

SAMN03580088 • SRS927306 • All experiments • All runs

Organism: Endomyzostoma scotia

Library:

Name: Endomyzostomida

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM PCR

Layout: PAIRED

Spot descriptor:

1 forward103 reverse

Runs: 1 run, 58.5M spots, 11.8G bases, 6.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR2005728	58,494,748	11.8G	6.9Gb	2015-09-22

ID:: 1472244

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Sequence Read Archive

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