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SRX5547717: Transcriptome-based phylogeny of ticks of the genus Ixodes
1 ILLUMINA (Illumina HiSeq 2500) run: 19.3M spots, 4.7G bases, 1.6Gb downloads

Design: Ticks (Ixodes holocyclus) were sampled in 2016, on the Houat island (France), by Dr Olivier Plantard. Ticks were found on captured European rabbits (Oryctolagus cuniculus). RNA extraction was performed in 2016, independently for two conditions (engorged adult females, unengorged adult females). An equimolar mix was used to produce a single final sample. For all conditions, RNA was extracted using a NucleoSpin RNA XS column (Macherey-Nagel, Dren, Germany) including a DNase and was stored in RNAsin (Promega, Madison, USA). The library was prepared using the Truseq Stranded kit (v4), and was sequenced on one lane of Illumina HiSeq 2500 along with other tick samples (different species of the genus Ixodes).
Submitted by: INRA
Study: Transcriptome-based phylogeny of ticks of the genus Ixodes
show Abstracthide Abstract
The aim of this study was to study the phylogenetic relationships between ticks (Ixodida) through a phylo-transcriptomic approach (and thus based on many nuclear markers), with a special focus on the Ixodes genus, which comprises several species with a strong potential for pathogen transmission to animals or humans. Whereas the phylogenetic relationships among soft ticks (Argasidae), or among Metastriata hard ticks have been relatively well covered by several recent studies, the phylogeny of the Prostriata hard ticks (i.e. the genus Ixodes) has been comparatively less studied. We here propose a transcriptome-based phylogenetic study, by sequencing transcriptomes for new species of this genus: I. acuminatus, I. arboricola, I. canisuga, I. frontalis, I. hexagonus, I. holocyclus, I. ventalloi, I. vespertilionis.
Sample: VENT
SAMN11178536 • SRS4513318 • All experiments • All runs
Library:
Name: VENT
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 19.3M spots, 4.7G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR875704019,296,1954.7G1.6Gb2019-08-30

ID:
7478518

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