Illumina HiSeq 4000 paired end sequencing; qiita_ptid_7209:11872.G853... - SRA

ERX3954702: Illumina HiSeq 4000 paired end sequencing; qiita_ptid_7209:11872.G85336
1 ILLUMINA (Illumina HiSeq 4000) run: 1.1M spots, 343.1M bases, 148Mb downloads

Design: Using metabolomics and microbiome analysis as tools to investigate cheetah liver necrosis syndrome a pilot study

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: Using metabolomics and microbiome analysis as tools to investigate cheetah liver necrosis syndrome a pilot study

PRJEB36873 • ERP120125 • All experiments • All runs

show Abstracthide Abstract

The purpose of this project is to explore whether using metabolomics offers a more detailed biochemical picture of ingested materials, both dietary and environmental, beyond the limited nutritional analyses already available. Further, do cheetahs vary in their physiological response to these ingested materials, determined by studying the gut microbiome via fecal samples?

Sample: 11872.G85336; SD Cheetahs

SAMEA6582300 • ERS4346607 • All experiments • All runs

Organism: Daphnia sp. G17/1

Library:

Name: 11872.G85336

Instrument: Illumina HiSeq 4000

Strategy: OTHER

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Construction protocol: KHP

Experiment attributes: (show all 17 attributes...) (hide...)

center_name: UCSDMI

center_project_name: Cheetah_Liver_Necrosis_Study_11872

i5_index_id: iTru5_109_C

i7_index_id: iTru7_208_06

index: ACCTAAGG

index2: TACACGCT

lane: 8

pool: RKL_0030_Sarkis/Wu_UVA_Cheetah_BurkGold476

run_date: 2018-08-16

run_prefix: 11872.G85336.

runid: 180824_K00180_0664_AHW2LFBBXX_RKL_0030_Sarkis_UVA_ (show full text...)(hide...)

180824_K00180_0664_AHW2LFBBXX_RKL_0030_Sarkis_UVA_Cheetah_BurkGold475

sample_plate: SD_Cheetahs_11872_P7

sample_project: SD_Cheetahs_11872

sample_sheet: 2018-08-16_RKL0030_Sarkis_UVA_Cheetah_BurkGold2_Kn (show full text...)(hide...)

2018-08-16_RKL0030_Sarkis_UVA_Cheetah_BurkGold2_Knight_SampleSheet.csv

sample_well: B9

sequencing_meth: Sequencing by synthesis

well_description: SD_Cheetahs_11872_P7_B9_85336

Runs: 1 run, 1.1M spots, 343.1M bases, 148Mb

Run	# of Spots	# of Bases	Size	Published
ERR3946902	1,144,474	343.1M	148Mb	2020-02-25

ID:: 10197985

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity