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SRX030883: Illumina whole genome shotgun sequencing of genomic DNA paired-end libraries 'Solexa-21518' and 'Solexa-20777' containing 24 pooled Streptococcus pyogenes MGAS15008 samples
25 ILLUMINA (Illumina Genome Analyzer II) runs: 49.1M spots, 7.1G bases, 2.9Gb downloads

UUID: 28043f1b-ecfc-484b-81d6-6eda38e20fd2
Design: Provide sequencing coverage to use in comparative SNP analysis.
Submitted by: Broad Institute (BI)
Study: Streptococcus pyogenes
show Abstracthide Abstract
GAS (group A Streptococcus) is a Gram-positive bacterium that causes several diseases in humans, including pharyngitis and/or tonsillitis, skin infections (impetigo, erysipelis, and other forms of pyoderma), acute rheumatic fever (ARF), scarlet fever (SF), poststreptococcal glomerulonephritis, a toxic-shock-like syndrome, and necrotizing fasciitis (NF). The overall goal of this project is to provide unique understanding, at the nucleotide level, of the molecular genetic events contributing to epidemics caused by a bacterial pathogen, including antibiotic-resistant strains. The project will exploit the availability of a unique sample of 362 serotype M3 strains of group A Streptococcus recovered during an ongoing study of invasive infections in Ontario, Canada.
Library:
Name: Solexa-20777&Solexa-21518
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward barcode
Group tagBasecalls
tagged_110ACAGTTGA
tagged_163ACTGTATC
tagged_195AGCATGGA
tagged_220AGGTCGCA
tagged_222AGGTGCGA
tagged_291ATTCCTCT
tagged_320CAATAGTC
tagged_389CCAGCACC
tagged_3AACAATGG
tagged_474CGCTATGT
tagged_534CTGCGGAT
tagged_544CTGTGGCG
tagged_567GAAGGAAG
tagged_583GACCGTTG
tagged_584GACCTAAC
tagged_616GATATCCA
tagged_635GCAGCCGT
tagged_652GCCGCAAC
tagged_868TCGCTAGA
tagged_878TCTGCAAG
tagged_899TGCAAGTA
tagged_923TGTAACTC
tagged_934TTAATCAG
tagged_944TTATATCT
77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
analysis_type: WGSWithRef
gssr_ids: 35896.1 35898.1 35900.1 35902.1 35912.1 35914.1 35 (show full text...)(hide...)
35896.1 35898.1 35900.1 35902.1 35912.1 35914.1 35916.1 35950.1 35964.1 35966.1 35968.1 35970.1 35980.1 35982.1 35984.1 35986.1 35996.1 35998.1 36000.1 36002.1 36012.1 36014.1 36016.1 36018.1
lsids: BROAD:SEQUENCING_SAMPLE:35896.1 BROAD:SEQUENCING_S (show full text...)(hide...)
BROAD:SEQUENCING_SAMPLE:35896.1 BROAD:SEQUENCING_SAMPLE:35898.1 BROAD:SEQUENCING_SAMPLE:35900.1 BROAD:SEQUENCING_SAMPLE:35902.1 BROAD:SEQUENCING_SAMPLE:35912.1 BROAD:SEQUENCING_SAMPLE:35914.1 BROAD:SEQUENCING_SAMPLE:35916.1 BROAD:SEQUENCING_SAMPLE:35950.1 BROAD:SEQUENCING_SAMPLE:35964.1 BROAD:SEQUENCING_SAMPLE:35966.1 BROAD:SEQUENCING_SAMPLE:35968.1 BROAD:SEQUENCING_SAMPLE:35970.1 BROAD:SEQUENCING_SAMPLE:35980.1 BROAD:SEQUENCING_SAMPLE:35982.1 BROAD:SEQUENCING_SAMPLE:35984.1 BROAD:SEQUENCING_SAMPLE:35986.1 BROAD:SEQUENCING_SAMPLE:35996.1 BROAD:SEQUENCING_SAMPLE:35998.1 BROAD:SEQUENCING_SAMPLE:36000.1 BROAD:SEQUENCING_SAMPLE:36002.1 BROAD:SEQUENCING_SAMPLE:36012.1 BROAD:SEQUENCING_SAMPLE:36014.1 BROAD:SEQUENCING_SAMPLE:36016.1 BROAD:SEQUENCING_SAMPLE:36018.1
material_type: Genomic DNA
projects: G2956 G2958 G2960 G2962 G2972 G2974 G2976 G2980 G2 (show full text...)(hide...)
G2956 G2958 G2960 G2962 G2972 G2974 G2976 G2980 G2982 G2984 G2986 G2988 G2990 G3004 G3006 G3008 G3010 G3012 G3014 G3018 G3032 G3034 G3036 G3038
work_request: 21008
Pipeline: show...hide...
NameStepProgramVersion
2010-03-10 18:33:32.0Rig Software2.6.25
base caller2010-03-10 18:33:19.0GAPipeline1.6.0a16
Runs: 25 runs, 49.1M spots, 7.1G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR0652941,888,835272M114.6Mb2010-11-13
SRR0652951,963,506282.7M118.4Mb2010-11-13
SRR0652961,915,517275.8M116.4Mb2010-11-13
SRR0652981,845,818265.8M113.5Mb2010-11-13
SRR0653001,910,565275.1M116.4Mb2010-11-13
SRR0653052,076,902299.1M124.4Mb2010-11-13
SRR0653071,838,181264.7M111.5Mb2010-11-13
SRR0653081,922,020276.8M116.3Mb2010-11-13
SRR0653113,068,666441.9M159Mb2010-11-18
SRR0653131,979,772285.1M120.3Mb2010-11-13
SRR0653172,006,166288.9M121.7Mb2010-11-13
SRR0653201,798,690259M108.5Mb2010-11-13
SRR0653211,858,439267.6M114.5Mb2010-11-13
SRR0653221,916,193275.9M117.9Mb2010-11-13
SRR0653291,825,757262.9M111.4Mb2010-11-13
There are 10 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS0248873.1M441.9M
2SRS114614 : tagged_195_AGCATGGA1.9M272M
3SRS114615 : tagged_934_TTAATCAG2M282.7M
4SRS114616 : tagged_474_CGCTATGT1.9M275.8M
5SRS114618 : tagged_583_GACCGTTG1.8M265.8M
6SRS114620 : tagged_389_CCAGCACC1.9M275.1M
7SRS114625 : tagged_944_TTATATCT2.1M299.1M
8SRS114627 : tagged_584_GACCTAAC1.8M264.7M
9SRS114628 : tagged_616_GATATCCA1.9M276.8M
10SRS114631 : tagged_3_AACAATGG1.8M259M
11SRS114632 : tagged_291_ATTCCTCT2.1M303.1M
12SRS114633 : tagged_567_GAAGGAAG2M288.9M
13SRS114634 : tagged_868_TCGCTAGA2M291.9M
14SRS114635 : tagged_110_ACAGTTGA1.8M261.3M
15SRS114636 : tagged_320_CAATAGTC1.9M278.5M
16SRS114637 : tagged_222_AGGTGCGA1.8M262.9M
17SRS114638 : tagged_544_CTGTGGCG2M282.4M
18SRS114639 : tagged_652_GCCGCAAC1.8M263.2M
19SRS114640 : tagged_635_GCAGCCGT1.9M267.6M
20SRS114641 : tagged_220_AGGTCGCA1.9M272.5M
21SRS114642 : tagged_534_CTGCGGAT1.9M275.9M
22SRS114643 : tagged_923_TGTAACTC2M285.1M
23SRS114644 : tagged_899_TGCAAGTA1.9M274.4M
24SRS114645 : tagged_163_ACTGTATC1.9M266.8M
25SRS114646 : tagged_878_TCTGCAAG2M284.3M
26 : defaultn/an/a

ID:
37593

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