U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX022239: Synthetic Genomics of tropical clawed frog
1 ILLUMINA (Illumina Genome Analyzer II) run: 5.7M spots, 861M bases, 528.4Mb downloads

Design: Illumina sequencing of library 1987460, constructed from sample accession ERS018082 for study accession ERP002095. This is part of an Illumina multiplexed sequencing run (5970_6). This submission includes reads tagged with the sequence ACAGTGGT.
Submitted by: The Wellcome Trust Sanger Institute (SC)
Study: XT_mutant_RNAseq
show Abstracthide Abstract
We have identified by tilling a Xenopus tropicalis rax mutant in which the gene has a premature stop codon before the homeobox domain. The rax gene is essential for eye development and has been identified as a causative gene for human ocular malformations such as anophthalmia and microphthalmia. The phenotype of the X.tropicalis mutant replicates the human condition with complete loss or small eyes. By analysis of the full RNA complement of rax mutants compared to wild type siblings we hope to gain a better understanding of the role of rax during eye development and the genes that it regulates. This is part of an ongoing collaboration with Dr Robert Grainger, University of Virginia. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see www.sanger.ac.uk/datasharing/
Sample:
SAMEA1025687 • ERS018082 • All experiments • All runs
Library:
Name: 1987460
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Illumina cDNA protocol
Spot descriptor:
forward barcode_tag
Group tagBasecalls
5ACAGTGGT
85  reverse

Runs: 1 run, 5.7M spots, 861M bases, 528.4Mb
Run# of Spots# of BasesSizePublished
ERR0451775,664,520861M528.4Mb2011-11-03

ID:
113000

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...