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ERX2613156: Illumina HiSeq 2500 sequencing; Rhesus macaque RNA-seq time-series of the development of six major organs
1 ILLUMINA (Illumina HiSeq 2500) run: 36.1M spots, 3.6G bases, 1.3Gb downloads

Design: Rhesus macaque RNA-seq time-series of the development of six major organs
Submitted by: University of Heidelberg
Study: Rhesus macaque RNA-seq time-series of the development of six major organs
show Abstracthide Abstract
This dataset covers the development of 6 organs (brain, cerebellum, heart, kidney, liver and testis) from embryonic day 93 to adulthood.
Sample: 5498sTS.Macaque.Cerebellum.153dpb.Male
SAMEA4688390 • ERS2508576 • All experiments • All runs
Organism: Macaca mulatta
Library:
Name: 5498sTS.Macaque.Cerebellum.153dpb.Male_s
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: SINGLE
Construction protocol: The organs were dissected from 13 developmental stages (starting at e93 until 20-26 years of age). The prenatal brain was divided into two regions: forebrain together with the midbrain (referred to as the 'brain') and hindbrain (referred to as the 'cerebellum'). The postnatal 'brain' and 'cerebellum' samples comprise the dorsolateral prefrontal region of the cerebral cortex and lateral cerebellar cortex, respectively. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).
Experiment attributes:
Experimental Factor: developmental stage: 6 months postnatal
Experimental Factor: organism part: hindbrain
Runs: 1 run, 36.1M spots, 3.6G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
ERR259687136,056,9753.6G1.3Gb2019-02-19

ID:
7293729

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