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SRX1286470: GSM1893251: Taira201203_XENLA_stomach; Xenopus laevis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 63.5M spots, 12.7G bases, 8.5Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Tissue gene expression of Xenopus laevis J strain [tissue]
show Abstracthide Abstract
Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S0002). Overall design: Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)
Sample: Taira201203_XENLA_stomach
SAMN04111060 • SRS1089420 • All experiments • All runs
Organism: Xenopus laevis
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Whole tissue was minced before mRNA extraction; mRNA was extracted with TRIzol protocol; the column purification was performed after extraction. Standard non-strand-specific RNA-seq protocol for HiSeq 2000, with poly-A capturing method
Experiment attributes:
GEO Accession: GSM1893251
Links:
Runs: 1 run, 63.5M spots, 12.7G bases, 8.5Gb
Run# of Spots# of BasesSizePublished
SRR251514763,514,55512.7G8.5Gb2016-10-24

ID:
1840490

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