GSM1893258: Ueno201210_XENLA_liver; Xenopus laevis; RNA-Seq - SRA

SRX1286477: GSM1893258: Ueno201210_XENLA_liver; Xenopus laevis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 24.7M spots, 4.9G bases, 3Gb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Tissue gene expression of Xenopus laevis J strain [tissue]

PRJNA296921 • SRP064167 • All experiments • All runs

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Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S0002). Overall design: Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)

Sample: Ueno201210_XENLA_liver

SAMN04111067 • SRS1089413 • All experiments • All runs

Organism: Xenopus laevis

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Whole tissue was minced before mRNA extraction; mRNA was extracted with TRIzol protocol; the column purification was performed after extraction. Standard non-strand-specific RNA-seq protocol for HiSeq 2000, with poly-A capturing method

Experiment attributes:

GEO Accession: GSM1893258

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 24.7M spots, 4.9G bases, 3Gb

Run	# of Spots	# of Bases	Size	Published
SRR2515154	24,744,596	4.9G	3Gb	2016-10-24

ID:: 1840497

SRA

Sequence Read Archive

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