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SRX2140622: GSM2303794: Hamster_GV_oocyte_br2; Mesocricetus auratus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29.4M spots, 7.3G bases, 3.3Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptional profiling of mouse and hamster oocytes
show Abstracthide Abstract
We profiled transcriptomes from mouse GV, MII oocytes and 1 cell embryos and Hamster oocytes. Overall design: Examination of gene expression in different stages of oogenesis and early development
Sample: Hamster_GV_oocyte_br2
SAMN05731357 • SRS1672545 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was released from small number of oocytes upon incubation in water with RNase inhibitor for 5 min at 85°C. RNA was reverse-transcribed using RevertAid First Strand cDNA Synthesis Kit (Fermentas). Real-time PCR was carried out on LightCycler 480 System (Roche). Each reaction (10 µl) consisted of 5 µl Maxima® SYBR Green qPCR Master Mix (Fermentas), 0.4 µl mixed gene-specific forward and reverse primers (30 µM each) and 2 µl diluted cDNA. Each sample was run in triplicate. Total RNA was extracted from 25 oocyte using PicoPure RNA Isolation Kit with on-column genomic DNA digestion according to the manufacturer’s instruction (Thermo Fisher Scientific, Philadelphia, PA). Each sample was spiked in with 0.2pg synthesized Renilla Luciferase mRNA before extraction as normalization control. RNAseq libraries were constructed by using Ovation RNA-seq system V2(NuGEN, San Carlos, CA) followed by Ovation Ultralow Library system(DR Multiplex System, NuGEN, San Carlos, CA).
Experiment attributes:
GEO Accession: GSM2303794
Links:
Runs: 1 run, 29.4M spots, 7.3G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR417540129,350,7257.3G3.3Gb2017-05-16

ID:
3135402

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