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SRX2803963: GSM2616798: HuD-immunized 2; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 1.6M spots, 935.1M bases, 511.3Mb downloads

Submitted by: NCBI (GEO)
Study: Immune repertoire after immunization as seen by next generation sequencing and proteomics
show Abstracthide Abstract
We study the repertoire of immunoglobulin sequences after immunization in a cohort of rats. Animals were immunized with dinitrophenol modified KLH or with recombinant human HuD. In the immune reprtoire, and also in the matching proteomics data, we observe that the animals produce a repertoire that has many shared motifs for those immunized with the same antigen. Cluster analysis allows the samples to be segregated according to the immunogen used. Overall design: 5 animals were immunized with DNP-KLH and 5 animals were immunized with human recombinant HuD. The immunoglobulin heavy chain variable domain was amplified from splenocyte cDNA, and sequenced with a 2x300bp paired end method
Sample: HuD-immunized 2
SAMN06947937 • SRS2184212 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Trizol lysis of whole spleen cell suspension, RNA fraction c-DNA synthesis with gene-specific primer against the immunoglobulin heavy chain constant domain adjacent to the variable region, and including an UMI tag. c-DNA was futher amplified by a multiplex PCR method with primers complementary to the 5'UTR of the immunoglobulins. The 6-base random UMI tag is located ajacent to the (T7) reverse priming site (CTCCCTATAGTGAGTCGTATTA) that was also introduced during cDNA synthesis
Experiment attributes:
GEO Accession: GSM2616798
Links:
Runs: 1 run, 1.6M spots, 935.1M bases, 511.3Mb
Run# of Spots# of BasesSizePublished
SRR55343651,553,320935.1M511.3Mb2017-10-11

ID:
4038691

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