U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX319537: GSM1183060: XT32_ctrl_polyA-RNA_2nd; Xenopus tropicalis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 121.4M spots, 13.3G bases, 7.2Gb downloads

Submitted by: NCBI (GEO)
Study: In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency
show Abstracthide Abstract
Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcriptional level. Overall design: Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.
Sample: XT32_ctrl_polyA-RNA_2nd
SAMN02230357 • SRS456185 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Embryos were flash-frozen on dry ice, and total RNA was extracted using Trizol (Invitrogen) and subjected to two precipitations with ethanol and LiCl. Total RNA to the amount of two X. tropicalis embryos (~3 µg) was processed according to the Illumina TruSeq protocol (November 2010). The quality was controlled on the Bioanalyser 2100 (Agilent) using the DNA-specific chip DNA 1000 (Agilent). Libraries were read paired-end along 55 bases on the Illumina HiSeq 2000 machine.
Experiment attributes:
GEO Accession: GSM1183060
Links:
Runs: 1 run, 121.4M spots, 13.3G bases, 7.2Gb
Run# of Spots# of BasesSizePublished
SRR929123121,354,43313.3G7.2Gb2015-07-22

ID:
446488

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...