U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX329408: GSM1198497: cK3; Pan troglodytes; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2000) runs: 15.9M spots, 1.6G bases, 1.4Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Large-scale multi-species survey of metabolome and lipidome
show Abstracthide Abstract
This dataset was generated with the goal of comparative study of gene expression in three brain regions and two non-neural tissues of humans, chimpanzees, macaque monkeys and mice. Using this dataset, we performed studies of gene expression and gene splicing evolution across species and search of tissue-specific gene expression and splicing patterns. We also used the gene expression information of genes encoding metabolic enzymes in this dataset to support a larger comparative study of metabolome evolution in the same set of tissues and species. Overall design: 120 tissue samples of prefrontal cortex (PFC), primary visual cortex (VC), cerebellar cortex (CBC), kidney and skeletal muscle of humans, chimpanzees, macaques and mice. The data accompanies a large set of metabolite measurements of the same tissue samples. Enzyme expression was used to validate metabolite measurement variation among species.
Sample: cK3
SAMN02297905 • SRS465474 • All experiments • All runs
Organism: Pan troglodytes
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted by a Trizol (Invitrogen) procedure according to the manufacturer's instructions. All RNA quality was assessed using an Agilent 2100 Bioanalyser. Sequencing libraries were prepared using the TruSeq RNA-Seq Sample Prep Kit (Illumina) according to the manufacturer's instructions. Polyadenylated RNA was isolated using a poly-dT bead procedure and then chemically fragmented and randomly primed for reverse transcription. After second-strand synthesis, the ends of the double-stranded complementary DNA were repaired. After 3'-end adenylation of these products, Illumina Single-End Sequencing adapters were ligated to the blunt ends of the cDNA fragments. Ligated products were then PCR-amplified (15 cycles). The RNA-seq libraries were sequenced (100 cycles) on the Illumina Hiseq 2000 platform.
Experiment attributes:
GEO Accession: GSM1198497
Links:
External link:
Runs: 2 runs, 15.9M spots, 1.6G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR9452666,878,319687.8M613.4Mb2014-05-30
SRR9452678,985,300898.5M770.5Mb2014-05-30

ID:
458353

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...