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SRX3740152: RNA-Seq of cajanus cajan
1 ILLUMINA (Illumina HiSeq 1000) run: 29.6M spots, 6G bases, 4.1Gb downloads

Design: Total RNA libraries were prepared using isolated total RNA according to the protocol of Illumina TrueSeq RNA Library Preparation Kit (https://support.illumina.com/). The protocol includes purification and fragmentation of mRNA, first stand cDNA synthesis followed by second stand cDNA synthesis, end-repairing of the cDNA, 3 end adenylation, followed by adapter ligation and PCR amplification. The libraries were checked for the average mean size (260 bp) on Agilent DNA 1000 chip using Agilent 2100 Bioanalyzer. The library concentration was checked using Qubit Fluorometer. After obtaining the Qubit concentration for each of the respective libraries, cluster generation was performed using Illumina CBot instrument and finally loaded onto Illumina HiSeq 1000 platform for paired-end sequencing.
Submitted by: Indian Agricultural Research Institute
Study: Cajanus cajan isolate:11A_rep1 | cultivar:AKCM11 Raw sequence reads
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Total RNA libraries were prepared using isolated total RNA according to the protocol ofIllumina TrueSeq RNA Library Preparation Kit (https://support.illumina.com/). The protocolincludes purification and fragmentation of mRNA, first stand cDNA synthesis followed bysecond stand cDNA synthesis, end-repairing of the cDNA, 3 end adenylation, followed byadapter ligation and PCR amplification. The libraries were checked for the average mean size(260 bp) on Agilent DNA 1000 chip using Agilent 2100 Bioanalyzer. The libraryconcentration was checked using Qubit Fluorometer. After obtaining the Qubit concentrationfor each of the respective libraries, cluster generation was performed using Illumina CBotinstrument and finally loaded onto Illumina HiSeq 1000 platform for paired-end sequencing.
Sample: Plant sample from Cajanus cajan
SAMN08580357 • SRS2996862 • All experiments • All runs
Organism: Cajanus cajan
Library:
Name: R303_rep1
Instrument: Illumina HiSeq 1000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 29.6M spots, 6G bases, 4.1Gb
Run# of Spots# of BasesSizePublished
SRR678015229,618,9276G4.1Gb2019-03-01

ID:
5156774

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