GSM3872971: BT4D [S102]; Nematostella vectensis; RNA-Seq - SRA

SRX6037277: GSM3872971: BT4D [S102]; Nematostella vectensis; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 1.5M spots, 154.3M bases, 48.3Mb downloads

Submitted by: NCBI (GEO)

Study: Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian

PRJNA548291 • SRP201077 • All experiments • All runs

show Abstracthide Abstract

We utilized the eyeless sea anemone, Nematostella vectensis, to quantify gene expression differences between different colors of light (red, green, blue) and in constant darkness through comparisons of 96 transcriptomes Overall design: ntotal = 96. 6 time points (4 replicates at each) for 4 conditions. (6*4*4 = 96)

Sample: BT4D [S102]

SAMN12017034 • SRS4940568 • All experiments • All runs

Organism: Nematostella vectensis

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Whole-organism RNA was extracted from animals (that were preserved in RNAlater and stored at -80) using Ambion RNAqueous extraction kit. Libraries were prepared as in Meyer et al. (2011)

Experiment attributes:

GEO Accession: GSM3872971

Links:

NCBI link: NCBI Entrez (gds)

Runs: 2 runs, 1.5M spots, 154.3M bases, 48.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR9266995	793,225	80.1M	25.2Mb	2019-06-12
SRR9266996	734,260	74.2M	23.1Mb	2019-06-12

ID:: 8080028

SRA

Sequence Read Archive

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