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SRX7070003: GSM4143860: RNA seq species 6; Pantherophis guttatus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 47.5M spots, 7.7G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)
Study: Comparative analysis of squamate brains unveils multi-level variation in cerebellar architecture associated with locomotor specialization
show Abstracthide Abstract
We exploited the extraordinary ecomorphological diversity of squamates to assess brain phenotypic diversification with respect to locomotor specialization, by integrating transcriptomic data along with other methods. We reveal significant changes in cerebellar morphology as well as dynamic gene expression that all correlate with locomotor behaviours. Overall design: RNA sequencing of adult cerebellum tissues from ten different squamate species, using NextSeq 500 platform (Illumina, U.S.A.). Conclusions is only based on the 630 orthologous genes (present in the current table) identified among all ten species analyzed. We have not used all genes in our work, but only orthologous genes.
Sample: RNA seq species 6
SAMN13153857 • SRS5586274 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cerebella were dissected, flash frozen in liquid nitrogen, and RNA was harvested using the RNeasy Plus Micro Kit (Qiagen, Germany). RNA Integrity Number (RIN) values were determined using Agilent 2100 Bioanalyzer (Agilent Technologies, U.S.A.). Libraries were produced using the TruSeq Stranded Total RNA Kit with Ribo-Zero (Human/Mouse/Rat; Illumina, U.S.A.).
Experiment attributes:
GEO Accession: GSM4143860
Links:
Runs: 1 run, 47.5M spots, 7.7G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR1036086947,524,8097.7G2.8Gb2019-11-08

ID:
9294864

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