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SRX9470346: GSM4891634: MesAur_Lung_day2_CoV2_100pfu_1; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 13.4M spots, 2G bases, 797.3Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Lung_day2_CoV2_100pfu_1
SAMN16727625 • SRS7680699 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891634
Links:
Runs: 4 runs, 13.4M spots, 2G bases, 797.3Mb
Run# of Spots# of BasesSizePublished
SRR130194583,260,348492.3M200.8Mb2020-11-11
SRR130194593,221,923486.5M197.6Mb2020-11-11
SRR130194603,481,396525.7M201.5Mb2020-11-11
SRR130194613,419,053516.3M197.5Mb2020-11-11

ID:
12376682

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