U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX9470363: GSM4891651: MesAur_Lung_day1_CoV2_10000pfu_3; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 22.7M spots, 3.2G bases, 1.4Gb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Lung_day1_CoV2_10000pfu_3
SAMN16727608 • SRS7680716 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891651
Links:
Runs: 4 runs, 22.7M spots, 3.2G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR130195275,500,326772.7M357.5Mb2020-11-11
SRR130195285,447,817764.3M349.9Mb2020-11-11
SRR130195295,888,605822.8M367.7Mb2020-11-11
SRR130195305,851,809817.3M362.6Mb2020-11-11

ID:
12376699

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...