U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX9470387: GSM4891674: MesAur_Trachea_day1_CoV2_100pfu_2; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 50.9M spots, 7.7G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Trachea_day1_CoV2_100pfu_2
SAMN16727582 • SRS7680740 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891674
Links:
Runs: 4 runs, 50.9M spots, 7.7G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR1301962012,135,9481.8G795Mb2020-11-11
SRR1301962111,737,0001.8G761.2Mb2020-11-11
SRR1301962213,592,3422.1G862.6Mb2020-11-11
SRR1301962313,391,5822G844Mb2020-11-11

ID:
12376723

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...