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SRX9470402: GSM4891689: MesAur_Trachea_day14_CoV2_100pfu_2; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 5.7M spots, 780.9M bases, 276.7Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Trachea_day14_CoV2_100pfu_2
SAMN16727567 • SRS7680755 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891689
Links:
Runs: 4 runs, 5.7M spots, 780.9M bases, 276.7Mb
Run# of Spots# of BasesSizePublished
SRR130196811,413,135194.8M69.9Mb2020-11-11
SRR130196821,401,025192.9M67.5Mb2020-11-11
SRR130196831,450,373199.9M71.6Mb2020-11-11
SRR130196841,403,498193.3M67.7Mb2020-11-11

ID:
12376738

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