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SRX9470421: GSM4891708: MesAur_Trachea_day14_CoV2_10000pfu_3; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 5.9M spots, 692.3M bases, 259.6Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Trachea_day14_CoV2_10000pfu_3
SAMN16727597 • SRS7680774 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891708
Links:
Runs: 4 runs, 5.9M spots, 692.3M bases, 259.6Mb
Run# of Spots# of BasesSizePublished
SRR130197581,464,098173.3M65.4Mb2020-11-11
SRR130197591,449,805170.9M63.7Mb2020-11-11
SRR130197601,491,920176.5M66.9Mb2020-11-11
SRR130197611,451,407171.5M63.6Mb2020-11-11

ID:
12376757

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