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SRX9470436: GSM4891723: MesAur_Brain_day6_CoV2_100pfu_1; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 12.2M spots, 1.8G bases, 728.9Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Brain_day6_CoV2_100pfu_1
SAMN16727468 • SRS7680789 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891723
Links:
Runs: 4 runs, 12.2M spots, 1.8G bases, 728.9Mb
Run# of Spots# of BasesSizePublished
SRR130198193,017,065455.6M186.2Mb2020-11-11
SRR130198202,967,289448.1M181.5Mb2020-11-11
SRR130198213,161,559477.4M183.1Mb2020-11-11
SRR130198223,087,690466.2M178.2Mb2020-11-11

ID:
12376772

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