U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX9470454: GSM4891737: MesAur_Brain_day2_CoV2_10000pfu_3; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 1.8M spots, 277.7M bases, 98.6Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Brain_day2_CoV2_10000pfu_3
SAMN16727494 • SRS7680807 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891737
Links:
Runs: 4 runs, 1.8M spots, 277.7M bases, 98.6Mb
Run# of Spots# of BasesSizePublished
SRR13019875444,42367.1M25Mb2020-11-11
SRR13019876449,40067.9M25.2Mb2020-11-11
SRR13019877477,34372.1M24.6Mb2020-11-11
SRR13019878467,57870.6M23.9Mb2020-11-11

ID:
12376790

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...