U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX9470459: GSM4891742: MesAur_Brain_day6_CoV2_10000pfu_2; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 10.5M spots, 1.6G bases, 621Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Brain_day6_CoV2_10000pfu_2
SAMN16727497 • SRS7680812 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891742
Links:
Runs: 4 runs, 10.5M spots, 1.6G bases, 621Mb
Run# of Spots# of BasesSizePublished
SRR130198952,548,808384.9M155.5Mb2020-11-11
SRR130198962,577,960389.3M156.5Mb2020-11-11
SRR130198972,719,131410.6M155.5Mb2020-11-11
SRR130198982,690,854406.3M153.5Mb2020-11-11

ID:
12376795

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...