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SRX9731531: GSM4988037: ATAC_12h_Bioreplicate 1; Strongylocentrotus purpuratus; ATAC-seq
1 ILLUMINA (Illumina HiSeq 2500) run: 80.9M spots, 24.3G bases, 8.6Gb downloads

Submitted by: NCBI (GEO)
Study: PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ATAC-Seq)
show Abstracthide Abstract
PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Overall design: Machine learning models are trained and tested wit the different epigenetic marks for the precdiction of genomic with active reporter gene activity.
Sample: ATAC_12h_Bioreplicate 1
SAMN17152470 • SRS7924313 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Density gradient nuclear prep Nextera DNA Sample Preparation Kit (24 Samples) (Illumina Cat # FC-121-1030) was used for library generation
Experiment attributes:
GEO Accession: GSM4988037
Links:
Runs: 1 run, 80.9M spots, 24.3G bases, 8.6Gb
Run# of Spots# of BasesSizePublished
SRR1330265380,935,78424.3G8.6Gb2021-06-03

ID:
12725860

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