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SRX9731536: GSM4988036: PRO-seq_12h_SE_Biorep3; Strongylocentrotus purpuratus; OTHER
1 ILLUMINA (Illumina HiSeq 2500) run: 63.9M spots, 19.2G bases, 8.4Gb downloads

Submitted by: NCBI (GEO)
Study: PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)
show Abstracthide Abstract
PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Overall design: Machine learning models are trained and tested wit the different epigenetic marks for the prediction of genomic with active reporter gene activity.
Sample: PRO-seq_12h_SE_Biorep3
SAMN17152471 • SRS7924318 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Density gradient nuclear prep Chu et al., 2018. PMCID: PMC6204104
Experiment attributes:
GEO Accession: GSM4988036
Links:
Runs: 1 run, 63.9M spots, 19.2G bases, 8.4Gb
Run# of Spots# of BasesSizePublished
SRR1330265863,858,42319.2G8.4Gb2021-06-03

ID:
12725871

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