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ERX1749237: Illumina HiSeq 2500 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2500) run: 11.6M spots, 2.9G bases, 1.1Gb downloads

Design: WGS library
Submitted by: Institute of Bioinformatics and Systems Biology
Study: The genome sequence of Ustilago bromivora
show Abstracthide Abstract
Ustilago bromivora is a biotrophic pathogenic fungus belonging to the group of head smuts. It infects the model grass Brachypodium distachyon and causes visible symptoms in the late stages of the plant development were infected spikelets are converted to smut sori. The well-established model smut fungus Ustilago maydis has been previously shown to be a useful to study aspects of biotrophic pathogenic fungi in general. Nevertheless on the host plant side (Zea maize) there are several serious restrictions for two sided functional studies of the biotrophic interaction. The Ustilago bromivora host plant Brachypodium distachyon has in contrast to this all advantages for a fully accessible model system (diploid, easy to transform, selfing, small size, short lifecycle, sequenced genome etc.). Therefore the Ustilago bromivora genome will become a valuable resource to make two sided functional studies of factors shaping the biotrophic plant-fungal interaction possible.
Sample: Ustilago bromivora UB2 genome
SAMEA4497161 • ERS1396340 • All experiments • All runs
Library:
Name: UB2 Illumina Seq
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol: Library from genomic UB2 DNA that was sheared in an ultra-sonicator was prepared with the NEBNext Ultra DNA Library Prep Kit for Illumina (New England Biolabs) according to the manufacturer's instructions.
Runs: 1 run, 11.6M spots, 2.9G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
ERR167956711,587,2732.9G1.1Gb2016-11-03

ID:
3390698

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