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SRX5961752: Whole genome Illumina MiSeq sequence of Shigella sonnei
1 ILLUMINA (Illumina MiSeq) run: 778,295 spots, 367.4M bases, 228.7Mb downloads

External Id: EXT00359997
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
PRJNA278886 • SRP056445 • All experiments • All runs
show Abstracthide Abstract
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.
Sample:
SAMN11948688 • SRS4870990 • All experiments • All runs
Organism: Shigella sonnei
Library:
Name: Nextera XT library SEQ000090387
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
1  forward251  reverse

Runs: 1 run, 778,295 spots, 367.4M bases, 228.7Mb
Run# of Spots# of BasesSizePublished
SRR9189606778,295367.4M228.7Mb2019-06-03

ID:
7997258

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