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ERX4112949: NextSeq 550 paired end sequencing
1 ILLUMINA (NextSeq 550) run: 1.4M spots, 416.7M bases, 186.5Mb downloads

Submitted by: EMBL-EBI
Study: Mapping of mutations that alleviate a retron-mediated phenotype in Salmonella
show Abstracthide Abstract
Salmonella enterica subsp. enterica ser. Typhimurium (STm) contains a retron (retron-Sen2), a prokaryotic genetic retroelement which produces small single-stranded DNA (msDNA). Gene deletions that abrogate msDNA biosynthesis of retron-Sen2 (?rrtT, ?xseA, ?msrmsd) lead to inhibition of bacterial growth in cold-temperatures (cold-sensitivity). To understand why msDNA is required for growth in cold, we isolated suppressor strains that exhibited restored growth in cold (starting from cold-sensitive mutants ?rrtT, ?xseA, and ?msrmsd), and sequenced their genomes in order to map mutations that potentially alleviate the retron-dependent cold-sensitivity phenotype.
Sample: delta-msrmsd Suppressor 13
SAMEA6832867 • ERS4560485 • All experiments • All runs
Library:
Name: unspecified
Instrument: NextSeq 550
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 1.4M spots, 416.7M bases, 186.5Mb
Run# of Spots# of BasesSizePublished
ERR41471991,389,098416.7M186.5Mb2020-06-25

ID:
11200113

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