16S rRNA of BAL samples - SRA

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SRX8634384: 16S rRNA of BAL samples
1 OXFORD_NANOPORE (GridION) run: 8,013 spots, 11.6M bases, 10.2Mb downloads

Design: 16S rRNA amplicon sequencing of BAL samples. High accuracy basecalling on GridION Mk22

Submitted by: University of Cambridge

Study: Secondary pneumonia in critically ill ventilated patients with COVID-19

PRJNA642012 • SRP269256 • All experiments • All runs

We studied the microbial composition and diagnostic microbiology results of bronchoalveolar lavage (BAL) samples taken from adult COVID-19 patients and non-COVID-19 patients receiving artificial ventilation in a teaching hospital ICU. We observed that although COVID-19 patients had a greater incidence of VAP, the causative pathogens were similar in both groups.

Sample:

SAMN15391232 • SRS6920945 • All experiments • All runs

Organism: human lung metagenome

Library:

Name: sample22

Instrument: GridION

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Runs: 1 run, 8,013 spots, 11.6M bases, 10.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR12110404	8,013	11.6M	10.2Mb	2020-06-29

ID:: 11222480

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