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SRX8843765: GSM4700013: HL_Rep2; Drosophila melanogaster; RNA-Seq
1 BGISEQ (BGISEQ-500) run: 21.2M spots, 4.2G bases, 1.6Gb downloads

Submitted by: NCBI (GEO)
Study: Changes in nuclear lamin-B stability marks the onset of aging in Drosophila
show Abstracthide Abstract
In this study, we showed that reduced nuclear lamin-B marks the onset of physiological decline in young adult Drosophila and its ectopic expression in dopaminergic neurons is sufficient to improve their locomotor activity during aging. Furthermore, the decline in lamin-B protein appeared to be unrelated to its mRNA level. Instead, we found drastic changes to its protein solubility during aging. Given the importance of nuclear lamin-B in genome organization and the advancement of single-cell epigenome profiling technology, our findings provide the community the basis to further study how altered level of lamin-B protein may elicit changes in gene expression that can contribute to the onset of physiological decline in animals. Overall design: Comparison of differentially expressed genes in Day 30 adult lamin-B overexpressing and control sibling fly heads (2 replicates).
Sample: HL_Rep2
SAMN15667353 • SRS7106733 • All experiments • All runs
Library:
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Fly heads were dissected and frozen by liquid nitrogen. Total RNA was isolated from the pooled fly heads at the age of day 30 using RNAzol®RT (Sigma). RNA-sequencing was carried at BGI (Hong Kong) according to company's protocol. RNA quality was assessed with Agilent 2100 bioanalyzer. Following DNAse I treatment, mRNA enriched by magnetic beads coupled to Oligo-dT was fragmented and used as template for cDNA library construction. Short DNA fragments were then subjected to end-repair, A-tailing, adaptor ligation, size selection and sequenced on BGISEQ PE100.
Experiment attributes:
GEO Accession: GSM4700013
Links:
Runs: 1 run, 21.2M spots, 4.2G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR1234407521,216,9804.2G1.6Gb2021-12-01

ID:
11500354

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