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SRX9257238: GSM4820804: PSIB; Nematostella vectensis; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 18.8M spots, 5.6G bases, 2.2Gb downloads

Submitted by: NCBI (GEO)
Study: Spatial transcriptome of Nematostella vectensis apical organ reveals its molecular signature and associated cells
show Abstracthide Abstract
The spatial transcriptome data has allowed us to explore the differential gene expression among the oral-aboral domains and provided new insights into the apical organ signalling pathways for future mechanistic studies and genes associated with oral/aboral differentiation. This resource identifies numerous candidates for elucidating the functional role of the apical organ and to address the evolution of the metazoan larval nervous system. Overall design: Here, we uncovered the molecular signature of the apical organ in N. vectensis through spatial transcriptomics. We performed microdissection on N. vectensis larvae and carefully separated the aboral tissue from the rest of the larval body at the planula and late planula development stages.We acquired transcriptome data from both the aboral tissue and the rest of the body separately to perform differential gene expression (DGE) analysis.
Sample: PSIB
SAMN16387605 • SRS7488677 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using Trizol (Life technologies, USA) as instructed in manual. RNA-seq libraries were constructed using SENSE mRNA-Seq Library Prep Kit (Lexogen GmbH). Each library was indexed in order to multiplex samples on the Illumina.
Experiment attributes:
GEO Accession: GSM4820804
Links:
Runs: 1 run, 18.8M spots, 5.6G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR1278798018,786,7055.6G2.2Gb2021-10-02

ID:
12076712

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