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SRX11326802: GSM5412783: PCR_NGS-Heart-sup_tRNA_treat-1; Mus musculus; OTHER
1 ILLUMINA (Illumina MiSeq) run: 58,800 spots, 16.7M bases, 6.8Mb downloads

Submitted by: NCBI (GEO)
Study: AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice (amplicon)
show Abstracthide Abstract
In this study, we utilized a mouse model of mucopolysaccharidosis type I (MPS-I) carrying a homozygous nonsense mutation in the Idua gene (Idua-W401X, TGG?TAG) to develop rAAV-delivered sup-tRNA therapeutics that can overcome a pathogenic UAG premature termination codon (PTC). Overall design: Idua amplicon sequencing of sup-tRNA treatedand untreated heterozygous Idua-W401X mice
Sample: PCR_NGS-Heart-sup_tRNA_treat-1
SAMN19989695 • SRS9360228 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Total RNA was extracted using the AllPrep DNA/RNA Mini Kit with on-column DNA digestion using the RNase-Free DNase Set. Oligo d(T)23 VN was used to reverse-transcribe mRNA into cDNA using the High-Capacity cDNA Reverse Transcription kit. KAPA HiFi HotStart ReadyMix was used to amplify a portion of the Idua cDNA spanning the nonsense mutation (W401X in mouse and W402X in human). Amplicons were purified with DNA Clean & Concentrator Kit and subjected to next-generation sequencing by Massachusetts General Hospital CCIB DNA Core under standard conditions. amplicon NGS
Experiment attributes:
GEO Accession: GSM5412783
Links:
Runs: 1 run, 58,800 spots, 16.7M bases, 6.8Mb
Run# of Spots# of BasesSizePublished
SRR1501481058,80016.7M6.8Mb2021-07-17

ID:
15102088

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