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SRX11674217: mRNA-seq_of_Zebra_finch
1 ILLUMINA (NextSeq 500) run: 62.1M spots, 9.9G bases, 3.5Gb downloads

Design: PolyA method
Submitted by: Charles University
Study: Zebra finch transcriptomics using different NGS approaches
show Abstracthide Abstract
In this project we collected tissues (brain and skin) from 24 zebra finches 24 hours after the LPS administration. The RNA sequencing was done using different next generation sequencing (NGS) approaches: mRNA-seq and QuantSeq. We aimed to explore reliability of these approaches in differential gene expression estimates and describe skin and brain gene expression changes during peripheral inflammation.
Sample:
SAMN20551100 • SRS9706293 • All experiments • All runs
Library:
Name: MCTAGUS01R1
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Runs: 1 run, 62.1M spots, 9.9G bases, 3.5Gb
Run# of Spots# of BasesSizePublished
SRR1537160262,107,0039.9G3.5Gb2021-08-10

ID:
15590251

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